MotifPROP1.H12INVIVO.1.P.C
Gene (human)PROP1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Prop1
Gene synonyms (mouse)Prop-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length10
ConsensusdbhTAATKvv
GC content24.92%
Information content (bits; total / per base)9.198 / 0.92
Data sourcesChIP-Seq
Aligned words991

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.776 0.78 0.603 0.616 0.715 0.727 1.916 1.981 146.886 169.523

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 10 experiments median 0.978 0.964 0.959 0.937 0.93 0.902
best 0.994 0.99 0.988 0.981 0.974 0.963
Methyl HT-SELEX, 3 experiments median 0.983 0.968 0.975 0.959 0.959 0.938
best 0.993 0.988 0.983 0.975 0.961 0.948
Non-Methyl HT-SELEX, 7 experiments median 0.976 0.959 0.948 0.931 0.809 0.816
best 0.994 0.99 0.988 0.981 0.974 0.963

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.842 0.469 0.815 0.547
batch 2 0.769 0.417 0.679 0.523
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyPROP {3.1.3.20} (TFClass)
TFClass IDTFClass: 3.1.3.20.1
HGNCHGNC:9455
MGIMGI:109330
EntrezGene (human)GeneID:5626
(SSTAR profile)
EntrezGene (mouse)GeneID:19127
(SSTAR profile)
UniProt ID (human)PROP1_HUMAN
UniProt ID (mouse)PROP1_MOUSE
UniProt AC (human)O75360
(TFClass)
UniProt AC (mouse)P97458
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 7
Methyl-HT-SELEX 3
PCM
ACGT
01451.0149.0168.0223.0
02138.0243.0233.0377.0
03167.0373.081.0370.0
0412.02.00.0977.0
05983.02.03.03.0
06982.01.04.04.0
071.03.03.0984.0
0830.0108.0198.0655.0
09333.0175.0330.0153.0
10545.0180.0214.052.0
PFM
ACGT
010.4550.150.170.225
020.1390.2450.2350.38
030.1690.3760.0820.373
040.0120.0020.00.986
050.9920.0020.0030.003
060.9910.0010.0040.004
070.0010.0030.0030.993
080.030.1090.20.661
090.3360.1770.3330.154
100.550.1820.2160.052
PWM
ACGT
010.596-0.504-0.385-0.104
02-0.58-0.019-0.0610.417
03-0.3910.407-1.1040.399
04-2.9-4.204-4.9741.367
051.373-4.204-3.967-3.967
061.372-4.517-3.775-3.775
07-4.517-3.967-3.9671.374
08-2.062-0.821-0.2220.968
090.294-0.3450.285-0.478
100.785-0.317-0.145-1.535
Standard thresholds
P-value Threshold
0.001 5.40246
0.0005 6.16967
0.0001 7.366625