| Motif | PRGR.H12INVIVO.1.P.B |
| Gene (human) | PGR (GeneCards) |
| Gene synonyms (human) | NR3C3 |
| Gene (mouse) | Pgr |
| Gene synonyms (mouse) | Nr3c3, Pr |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | PRGR.H12INVIVO.1.P.B |
| Gene (human) | PGR (GeneCards) |
| Gene synonyms (human) | NR3C3 |
| Gene (mouse) | Pgr |
| Gene synonyms (mouse) | Nr3c3, Pr |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 8 |
| Consensus | RGvACAdn |
| GC content | 42.6% |
| Information content (bits; total / per base) | 7.704 / 0.963 |
| Data sources | ChIP-Seq |
| Aligned words | 1019 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 28 (158) | 0.774 | 0.842 | 0.634 | 0.718 | 0.713 | 0.789 | 1.748 | 2.207 | 65.704 | 168.208 |
| Mouse | 8 (55) | 0.737 | 0.839 | 0.591 | 0.717 | 0.724 | 0.788 | 1.8 | 2.014 | 54.553 | 151.721 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 4.685 | 4.195 | 0.192 | 0.122 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Steroid hormone receptors {2.1.1} (TFClass) |
| TF subfamily | GR-like (NR3C) {2.1.1.1} (TFClass) |
| TFClass ID | TFClass: 2.1.1.1.3 |
| HGNC | HGNC:8910 |
| MGI | MGI:97567 |
| EntrezGene (human) | GeneID:5241 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18667 (SSTAR profile) |
| UniProt ID (human) | PRGR_HUMAN |
| UniProt ID (mouse) | PRGR_MOUSE |
| UniProt AC (human) | P06401 (TFClass) |
| UniProt AC (mouse) | Q00175 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 28 human, 8 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PRGR.H12INVIVO.1.P.B.pcm |
| PWM | PRGR.H12INVIVO.1.P.B.pwm |
| PFM | PRGR.H12INVIVO.1.P.B.pfm |
| Alignment | PRGR.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | PRGR.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | PRGR.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | PRGR.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | PRGR.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 571.0 | 4.0 | 362.0 | 82.0 |
| 02 | 76.0 | 8.0 | 925.0 | 10.0 |
| 03 | 575.0 | 144.0 | 178.0 | 122.0 |
| 04 | 967.0 | 14.0 | 30.0 | 8.0 |
| 05 | 13.0 | 988.0 | 8.0 | 10.0 |
| 06 | 957.0 | 8.0 | 12.0 | 42.0 |
| 07 | 176.0 | 108.0 | 331.0 | 404.0 |
| 08 | 336.0 | 159.0 | 194.0 | 330.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.56 | 0.004 | 0.355 | 0.08 |
| 02 | 0.075 | 0.008 | 0.908 | 0.01 |
| 03 | 0.564 | 0.141 | 0.175 | 0.12 |
| 04 | 0.949 | 0.014 | 0.029 | 0.008 |
| 05 | 0.013 | 0.97 | 0.008 | 0.01 |
| 06 | 0.939 | 0.008 | 0.012 | 0.041 |
| 07 | 0.173 | 0.106 | 0.325 | 0.396 |
| 08 | 0.33 | 0.156 | 0.19 | 0.324 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.803 | -3.801 | 0.349 | -1.119 |
| 02 | -1.194 | -3.272 | 1.285 | -3.085 |
| 03 | 0.81 | -0.565 | -0.356 | -0.729 |
| 04 | 1.329 | -2.791 | -2.09 | -3.272 |
| 05 | -2.857 | 1.35 | -3.272 | -3.085 |
| 06 | 1.319 | -3.272 | -2.927 | -1.769 |
| 07 | -0.367 | -0.849 | 0.26 | 0.459 |
| 08 | 0.275 | -0.467 | -0.27 | 0.257 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.48036 |
| 0.0005 | 6.04865 |
| 0.0001 | 7.040475 |