| Motif | PRGR.H12INVITRO.1.P.D |
| Gene (human) | PGR (GeneCards) |
| Gene synonyms (human) | NR3C3 |
| Gene (mouse) | Pgr |
| Gene synonyms (mouse) | Nr3c3, Pr |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | PRGR.H12INVITRO.1.P.D |
| Gene (human) | PGR (GeneCards) |
| Gene synonyms (human) | NR3C3 |
| Gene (mouse) | Pgr |
| Gene synonyms (mouse) | Nr3c3, Pr |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 7 |
| Consensus | RGvACAd |
| GC content | 48.82% |
| Information content (bits; total / per base) | 8.083 / 1.155 |
| Data sources | ChIP-Seq |
| Aligned words | 999 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 28 (158) | 0.785 | 0.857 | 0.644 | 0.748 | 0.706 | 0.759 | 1.551 | 1.744 | 60.431 | 128.337 |
| Mouse | 8 (55) | 0.744 | 0.844 | 0.594 | 0.723 | 0.722 | 0.772 | 1.599 | 1.767 | 47.301 | 131.699 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 4.575 | 4.163 | 0.251 | 0.139 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Steroid hormone receptors {2.1.1} (TFClass) |
| TF subfamily | GR-like (NR3C) {2.1.1.1} (TFClass) |
| TFClass ID | TFClass: 2.1.1.1.3 |
| HGNC | HGNC:8910 |
| MGI | MGI:97567 |
| EntrezGene (human) | GeneID:5241 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18667 (SSTAR profile) |
| UniProt ID (human) | PRGR_HUMAN |
| UniProt ID (mouse) | PRGR_MOUSE |
| UniProt AC (human) | P06401 (TFClass) |
| UniProt AC (mouse) | Q00175 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 28 human, 8 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PRGR.H12INVITRO.1.P.D.pcm |
| PWM | PRGR.H12INVITRO.1.P.D.pwm |
| PFM | PRGR.H12INVITRO.1.P.D.pfm |
| Alignment | PRGR.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | PRGR.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | PRGR.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | PRGR.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | PRGR.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 518.0 | 7.0 | 443.0 | 31.0 |
| 02 | 5.0 | 1.0 | 977.0 | 16.0 |
| 03 | 529.0 | 130.0 | 232.0 | 108.0 |
| 04 | 971.0 | 1.0 | 19.0 | 8.0 |
| 05 | 6.0 | 982.0 | 7.0 | 4.0 |
| 06 | 891.0 | 2.0 | 26.0 | 80.0 |
| 07 | 161.0 | 152.0 | 435.0 | 251.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.519 | 0.007 | 0.443 | 0.031 |
| 02 | 0.005 | 0.001 | 0.978 | 0.016 |
| 03 | 0.53 | 0.13 | 0.232 | 0.108 |
| 04 | 0.972 | 0.001 | 0.019 | 0.008 |
| 05 | 0.006 | 0.983 | 0.007 | 0.004 |
| 06 | 0.892 | 0.002 | 0.026 | 0.08 |
| 07 | 0.161 | 0.152 | 0.435 | 0.251 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.726 | -3.361 | 0.57 | -2.039 |
| 02 | -3.621 | -4.524 | 1.359 | -2.652 |
| 03 | 0.747 | -0.647 | -0.073 | -0.829 |
| 04 | 1.353 | -4.524 | -2.496 | -3.252 |
| 05 | -3.483 | 1.364 | -3.361 | -3.782 |
| 06 | 1.267 | -4.212 | -2.205 | -1.124 |
| 07 | -0.435 | -0.492 | 0.552 | 0.005 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.538655 |
| 0.0005 | 6.20404 |
| 0.0001 | 7.04365 |