MotifPRDM9.H12INVIVO.0.P.B
Gene (human)PRDM9
(GeneCards)
Gene synonyms (human)PFM6
Gene (mouse)Prdm9
Gene synonyms (mouse)Hst1, Meisetz
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length20
ConsensushRnddGGYAGYAvCWbCWbd
GC content51.85%
Information content (bits; total / per base)14.681 / 0.734
Data sourcesChIP-Seq
Aligned words876

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 4 (26) 0.83 0.962 0.815 0.943 0.814 0.955 4.285 5.59 193.886 474.284
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.71
HGNCHGNC:13994
MGIMGI:2384854
EntrezGene (human)GeneID:56979
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)PRDM9_HUMAN
UniProt ID (mouse)PRDM9_MOUSE
UniProt AC (human)Q9NQV7
(TFClass)
UniProt AC (mouse)Q96EQ9
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01406.0213.0117.0140.0
02544.077.0179.076.0
03244.0120.0300.0212.0
04435.061.0236.0144.0
05248.069.0243.0316.0
0696.05.0706.069.0
07184.014.0661.017.0
0821.0483.09.0363.0
09744.00.0114.018.0
1054.02.0813.07.0
1113.0484.05.0374.0
12819.08.043.06.0
13142.0220.0437.077.0
144.0867.00.05.0
15538.053.04.0281.0
1649.0314.0192.0321.0
1729.0785.022.040.0
18194.0141.040.0501.0
1985.0159.0365.0267.0
20176.0124.0399.0177.0
PFM
ACGT
010.4630.2430.1340.16
020.6210.0880.2040.087
030.2790.1370.3420.242
040.4970.070.2690.164
050.2830.0790.2770.361
060.110.0060.8060.079
070.210.0160.7550.019
080.0240.5510.010.414
090.8490.00.130.021
100.0620.0020.9280.008
110.0150.5530.0060.427
120.9350.0090.0490.007
130.1620.2510.4990.088
140.0050.990.00.006
150.6140.0610.0050.321
160.0560.3580.2190.366
170.0330.8960.0250.046
180.2210.1610.0460.572
190.0970.1820.4170.305
200.2010.1420.4550.202
PWM
ACGT
010.614-0.028-0.62-0.443
020.905-1.031-0.2-1.044
030.107-0.5950.313-0.032
040.682-1.2590.074-0.415
050.123-1.1380.1030.364
06-0.815-3.4961.165-1.138
07-0.173-2.6441.1-2.469
08-2.2750.787-3.0270.502
091.218-4.87-0.646-2.416
10-1.377-4.091.306-3.234
11-2.7090.789-3.4960.532
121.313-3.125-1.597-3.356
13-0.4290.0050.687-1.031
14-3.6571.37-4.87-3.496
150.894-1.395-3.6570.248
16-1.4710.358-0.130.38
17-1.9731.271-2.232-1.666
18-0.12-0.436-1.6660.823
19-0.934-0.3170.5080.197
20-0.217-0.5630.596-0.211
Standard thresholds
P-value Threshold
0.001 3.18501
0.0005 4.32696
0.0001 6.69401