| Motif | PRDM6.H12INVITRO.0.P.D |
| Gene (human) | PRDM6 (GeneCards) |
| Gene synonyms (human) | PFM3 |
| Gene (mouse) | Prdm6 |
| Gene synonyms (mouse) | Gm92, Prism |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PRDM6.H12INVITRO.0.P.D |
| Gene (human) | PRDM6 (GeneCards) |
| Gene synonyms (human) | PFM3 |
| Gene (mouse) | Prdm6 |
| Gene synonyms (mouse) | Gm92, Prism |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | ddvRGAAARvhd |
| GC content | 35.55% |
| Information content (bits; total / per base) | 9.517 / 0.793 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (12) | 0.575 | 0.615 | 0.373 | 0.411 | 0.645 | 0.693 | 1.66 | 1.877 | 1.858 | 12.658 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.23 |
| HGNC | HGNC:9350 |
| MGI | MGI:2684938 |
| EntrezGene (human) | GeneID:93166 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:225518 (SSTAR profile) |
| UniProt ID (human) | PRDM6_HUMAN |
| UniProt ID (mouse) | PRDM6_MOUSE |
| UniProt AC (human) | Q9NQX0 (TFClass) |
| UniProt AC (mouse) | Q3UZD5 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PRDM6.H12INVITRO.0.P.D.pcm |
| PWM | PRDM6.H12INVITRO.0.P.D.pwm |
| PFM | PRDM6.H12INVITRO.0.P.D.pfm |
| Alignment | PRDM6.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | PRDM6.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | PRDM6.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | PRDM6.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | PRDM6.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 336.0 | 145.0 | 328.0 | 191.0 |
| 02 | 430.0 | 76.0 | 308.0 | 186.0 |
| 03 | 382.0 | 128.0 | 413.0 | 77.0 |
| 04 | 598.0 | 3.0 | 316.0 | 83.0 |
| 05 | 1.0 | 6.0 | 988.0 | 5.0 |
| 06 | 870.0 | 106.0 | 2.0 | 22.0 |
| 07 | 974.0 | 10.0 | 4.0 | 12.0 |
| 08 | 952.0 | 13.0 | 20.0 | 15.0 |
| 09 | 783.0 | 61.0 | 130.0 | 26.0 |
| 10 | 538.0 | 192.0 | 202.0 | 68.0 |
| 11 | 371.0 | 330.0 | 135.0 | 164.0 |
| 12 | 457.0 | 168.0 | 182.0 | 193.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.336 | 0.145 | 0.328 | 0.191 |
| 02 | 0.43 | 0.076 | 0.308 | 0.186 |
| 03 | 0.382 | 0.128 | 0.413 | 0.077 |
| 04 | 0.598 | 0.003 | 0.316 | 0.083 |
| 05 | 0.001 | 0.006 | 0.988 | 0.005 |
| 06 | 0.87 | 0.106 | 0.002 | 0.022 |
| 07 | 0.974 | 0.01 | 0.004 | 0.012 |
| 08 | 0.952 | 0.013 | 0.02 | 0.015 |
| 09 | 0.783 | 0.061 | 0.13 | 0.026 |
| 10 | 0.538 | 0.192 | 0.202 | 0.068 |
| 11 | 0.371 | 0.33 | 0.135 | 0.164 |
| 12 | 0.457 | 0.168 | 0.182 | 0.193 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.294 | -0.54 | 0.27 | -0.267 |
| 02 | 0.539 | -1.175 | 0.207 | -0.293 |
| 03 | 0.422 | -0.663 | 0.499 | -1.162 |
| 04 | 0.868 | -3.975 | 0.233 | -1.089 |
| 05 | -4.525 | -3.484 | 1.369 | -3.622 |
| 06 | 1.242 | -0.849 | -4.213 | -2.362 |
| 07 | 1.355 | -3.066 | -3.783 | -2.909 |
| 08 | 1.332 | -2.839 | -2.45 | -2.711 |
| 09 | 1.137 | -1.39 | -0.648 | -2.206 |
| 10 | 0.763 | -0.262 | -0.212 | -1.284 |
| 11 | 0.393 | 0.276 | -0.61 | -0.418 |
| 12 | 0.6 | -0.394 | -0.315 | -0.257 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.91346 |
| 0.0005 | 5.79146 |
| 0.0001 | 7.432585 |