MotifPRDM5.H12INVIVO.1.P.B
Gene (human)PRDM5
(GeneCards)
Gene synonyms (human)PFM2
Gene (mouse)Prdm5
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length10
ConsensusbhYCTCCWKb
GC content61.83%
Information content (bits; total / per base)9.123 / 0.912
Data sourcesChIP-Seq
Aligned words972

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 4 (24) 0.68 0.705 0.515 0.537 0.651 0.681 1.592 1.774 38.207 86.409
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.195
HGNCHGNC:9349
MGIMGI:1918029
EntrezGene (human)GeneID:11107
(SSTAR profile)
EntrezGene (mouse)GeneID:70779
(SSTAR profile)
UniProt ID (human)PRDM5_HUMAN
UniProt ID (mouse)PRDM5_MOUSE
UniProt AC (human)Q9NQX1
(TFClass)
UniProt AC (mouse)Q9CXE0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0189.0198.0563.0122.0
02167.0313.0131.0361.0
0316.0383.0118.0455.0
046.0922.04.040.0
0517.026.03.0926.0
0651.0878.040.03.0
0716.0947.01.08.0
08649.055.019.0249.0
097.0139.0624.0202.0
1081.0357.0289.0245.0
PFM
ACGT
010.0920.2040.5790.126
020.1720.3220.1350.371
030.0160.3940.1210.468
040.0060.9490.0040.041
050.0170.0270.0030.953
060.0520.9030.0410.003
070.0160.9740.0010.008
080.6680.0570.020.256
090.0070.1430.6420.208
100.0830.3670.2970.252
PWM
ACGT
01-0.992-0.2030.836-0.682
02-0.3720.252-0.6120.394
03-2.6250.452-0.7150.624
04-3.4561.328-3.756-1.769
05-2.571-2.178-3.9481.333
06-1.5351.279-1.769-3.948
07-2.6251.355-4.5-3.226
080.978-1.462-2.4690.024
09-3.335-0.5530.939-0.183
10-1.0850.3820.1720.008
Standard thresholds
P-value Threshold
0.001 4.97599
0.0005 5.84006
0.0001 7.39765