MotifPRDM5.H12INVIVO.0.P.B
Gene (human)PRDM5
(GeneCards)
Gene synonyms (human)PFM2
Gene (mouse)Prdm5
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusdMCYbRnbCWCChbb
GC content61.29%
Information content (bits; total / per base)10.587 / 0.706
Data sourcesChIP-Seq
Aligned words924

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 4 (24) 0.794 0.825 0.668 0.729 0.811 0.849 2.73 3.12 191.333 284.276
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.195
HGNCHGNC:9349
MGIMGI:1918029
EntrezGene (human)GeneID:11107
(SSTAR profile)
EntrezGene (mouse)GeneID:70779
(SSTAR profile)
UniProt ID (human)PRDM5_HUMAN
UniProt ID (mouse)PRDM5_MOUSE
UniProt AC (human)Q9NQX1
(TFClass)
UniProt AC (mouse)Q9CXE0
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01393.0122.0179.0230.0
02236.0598.066.024.0
039.0898.03.014.0
04145.0504.07.0268.0
0547.0126.0251.0500.0
06121.0114.0604.085.0
07226.0274.0156.0268.0
0869.0244.0180.0431.0
0917.0826.020.061.0
10211.081.09.0623.0
1130.0874.010.010.0
127.0906.05.06.0
13467.0137.086.0234.0
1441.0204.0403.0276.0
1592.0364.0244.0224.0
PFM
ACGT
010.4250.1320.1940.249
020.2550.6470.0710.026
030.010.9720.0030.015
040.1570.5450.0080.29
050.0510.1360.2720.541
060.1310.1230.6540.092
070.2450.2970.1690.29
080.0750.2640.1950.466
090.0180.8940.0220.066
100.2280.0880.010.674
110.0320.9460.0110.011
120.0080.9810.0050.006
130.5050.1480.0930.253
140.0440.2210.4360.299
150.10.3940.2640.242
PWM
ACGT
010.528-0.632-0.253-0.004
020.0210.947-1.235-2.203
03-3.0791.352-3.901-2.696
04-0.4610.776-3.2860.148
05-1.564-0.60.0820.768
06-0.64-0.6990.957-0.987
07-0.0220.17-0.3890.148
08-1.1910.054-0.2470.62
09-2.5211.269-2.372-1.311
10-0.09-1.034-3.0790.988
11-1.9931.325-2.99-2.99
12-3.2861.361-3.547-3.408
130.7-0.517-0.9760.013
14-1.695-0.1230.5530.177
15-0.910.4520.054-0.031
Standard thresholds
P-value Threshold
0.001 4.60256
0.0005 5.51396
0.0001 7.33761