PRDM5.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PRDM5.H12INVITRO.0.P.D
Gene (human)	PRDM5 (GeneCards)
Gene synonyms (human)	PFM2
Gene (mouse)	Prdm5
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	dMCYbRnbCWCChbb
GC content	61.29%
Information content (bits; total / per base)	10.587 / 0.706
Data sources	ChIP-Seq
Aligned words	924

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	4 (24)	0.794	0.825	0.668	0.729	0.811	0.849	2.73	3.12	191.333	284.276

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.195
HGNC	HGNC:9349
MGI	MGI:1918029
EntrezGene (human)	GeneID:11107 (SSTAR profile)
EntrezGene (mouse)	GeneID:70779 (SSTAR profile)
UniProt ID (human)	PRDM5_HUMAN
UniProt ID (mouse)	PRDM5_MOUSE
UniProt AC (human)	Q9NQX1 (TFClass)
UniProt AC (mouse)	Q9CXE0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 4 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	PRDM5.H12INVITRO.0.P.D.pcm
PWM	PRDM5.H12INVITRO.0.P.D.pwm
PFM	PRDM5.H12INVITRO.0.P.D.pfm
Alignment	PRDM5.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	PRDM5.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	PRDM5.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	PRDM5.H12INVITRO.0.P.D_meme_format.meme
Transfac format	PRDM5.H12INVITRO.0.P.D_transfac_format.txt
Homer format	PRDM5.H12INVITRO.0.P.D_homer_format_0.001.txt PRDM5.H12INVITRO.0.P.D_homer_format_0.0005.txt PRDM5.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	393.0	122.0	179.0	230.0
02	236.0	598.0	66.0	24.0
03	9.0	898.0	3.0	14.0
04	145.0	504.0	7.0	268.0
05	47.0	126.0	251.0	500.0
06	121.0	114.0	604.0	85.0
07	226.0	274.0	156.0	268.0
08	69.0	244.0	180.0	431.0
09	17.0	826.0	20.0	61.0
10	211.0	81.0	9.0	623.0
11	30.0	874.0	10.0	10.0
12	7.0	906.0	5.0	6.0
13	467.0	137.0	86.0	234.0
14	41.0	204.0	403.0	276.0
15	92.0	364.0	244.0	224.0

PFM

	A	C	G	T
01	0.425	0.132	0.194	0.249
02	0.255	0.647	0.071	0.026
03	0.01	0.972	0.003	0.015
04	0.157	0.545	0.008	0.29
05	0.051	0.136	0.272	0.541
06	0.131	0.123	0.654	0.092
07	0.245	0.297	0.169	0.29
08	0.075	0.264	0.195	0.466
09	0.018	0.894	0.022	0.066
10	0.228	0.088	0.01	0.674
11	0.032	0.946	0.011	0.011
12	0.008	0.981	0.005	0.006
13	0.505	0.148	0.093	0.253
14	0.044	0.221	0.436	0.299
15	0.1	0.394	0.264	0.242

PWM

	A	C	G	T
01	0.528	-0.632	-0.253	-0.004
02	0.021	0.947	-1.235	-2.203
03	-3.079	1.352	-3.901	-2.696
04	-0.461	0.776	-3.286	0.148
05	-1.564	-0.6	0.082	0.768
06	-0.64	-0.699	0.957	-0.987
07	-0.022	0.17	-0.389	0.148
08	-1.191	0.054	-0.247	0.62
09	-2.521	1.269	-2.372	-1.311
10	-0.09	-1.034	-3.079	0.988
11	-1.993	1.325	-2.99	-2.99
12	-3.286	1.361	-3.547	-3.408
13	0.7	-0.517	-0.976	0.013
14	-1.695	-0.123	0.553	0.177
15	-0.91	0.452	0.054	-0.031

Standard thresholds

P-value	Threshold
0.001	4.60256
0.0005	5.51396
0.0001	7.33761