| Motif | PRD16.H12INVITRO.0.P.D |
| Gene (human) | PRDM16 (GeneCards) |
| Gene synonyms (human) | KIAA1675, MEL1, PFM13 |
| Gene (mouse) | Prdm16 |
| Gene synonyms (mouse) | Kiaa1675, Mel1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PRD16.H12INVITRO.0.P.D |
| Gene (human) | PRDM16 (GeneCards) |
| Gene synonyms (human) | KIAA1675, MEL1, PFM13 |
| Gene (mouse) | Prdm16 |
| Gene synonyms (mouse) | Kiaa1675, Mel1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | YCYYYWGGGRv |
| GC content | 63.2% |
| Information content (bits; total / per base) | 10.579 / 0.962 |
| Data sources | ChIP-Seq |
| Aligned words | 1001 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (13) | 0.793 | 0.837 | 0.657 | 0.715 | 0.717 | 0.756 | 2.077 | 2.202 | 62.523 | 108.155 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | EVI1-like {2.3.4.14} (TFClass) |
| TFClass ID | TFClass: 2.3.4.14.2 |
| HGNC | HGNC:14000 |
| MGI | MGI:1917923 |
| EntrezGene (human) | GeneID:63976 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:70673 (SSTAR profile) |
| UniProt ID (human) | PRD16_HUMAN |
| UniProt ID (mouse) | PRD16_MOUSE |
| UniProt AC (human) | Q9HAZ2 (TFClass) |
| UniProt AC (mouse) | A2A935 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PRD16.H12INVITRO.0.P.D.pcm |
| PWM | PRD16.H12INVITRO.0.P.D.pwm |
| PFM | PRD16.H12INVITRO.0.P.D.pfm |
| Alignment | PRD16.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | PRD16.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | PRD16.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | PRD16.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | PRD16.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 72.0 | 271.0 | 39.0 | 619.0 |
| 02 | 12.0 | 910.0 | 38.0 | 41.0 |
| 03 | 16.0 | 594.0 | 3.0 | 388.0 |
| 04 | 33.0 | 727.0 | 21.0 | 220.0 |
| 05 | 42.0 | 725.0 | 28.0 | 206.0 |
| 06 | 362.0 | 7.0 | 5.0 | 627.0 |
| 07 | 21.0 | 4.0 | 962.0 | 14.0 |
| 08 | 172.0 | 6.0 | 768.0 | 55.0 |
| 09 | 16.0 | 54.0 | 927.0 | 4.0 |
| 10 | 666.0 | 101.0 | 142.0 | 92.0 |
| 11 | 261.0 | 382.0 | 245.0 | 113.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.072 | 0.271 | 0.039 | 0.618 |
| 02 | 0.012 | 0.909 | 0.038 | 0.041 |
| 03 | 0.016 | 0.593 | 0.003 | 0.388 |
| 04 | 0.033 | 0.726 | 0.021 | 0.22 |
| 05 | 0.042 | 0.724 | 0.028 | 0.206 |
| 06 | 0.362 | 0.007 | 0.005 | 0.626 |
| 07 | 0.021 | 0.004 | 0.961 | 0.014 |
| 08 | 0.172 | 0.006 | 0.767 | 0.055 |
| 09 | 0.016 | 0.054 | 0.926 | 0.004 |
| 10 | 0.665 | 0.101 | 0.142 | 0.092 |
| 11 | 0.261 | 0.382 | 0.245 | 0.113 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.229 | 0.079 | -1.822 | 0.902 |
| 02 | -2.91 | 1.286 | -1.847 | -1.775 |
| 03 | -2.654 | 0.86 | -3.976 | 0.436 |
| 04 | -1.982 | 1.062 | -2.406 | -0.128 |
| 05 | -1.751 | 1.059 | -2.137 | -0.193 |
| 06 | 0.367 | -3.363 | -3.623 | 0.914 |
| 07 | -2.406 | -3.784 | 1.341 | -2.774 |
| 08 | -0.372 | -3.485 | 1.117 | -1.491 |
| 09 | -2.654 | -1.509 | 1.304 | -3.784 |
| 10 | 0.975 | -0.897 | -0.561 | -0.989 |
| 11 | 0.042 | 0.421 | -0.021 | -0.787 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.592025 |
| 0.0005 | 5.48576 |
| 0.0001 | 7.312545 |