PRD15.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PRD15.H12INVITRO.0.P.D
Gene (human)	PRDM15 (GeneCards)
Gene synonyms (human)	C21orf83, ZNF298
Gene (mouse)	Prdm15
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vbAARRYSYGGvvndRvd
GC content	54.92%
Information content (bits; total / per base)	11.747 / 0.653
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	8 (50)	0.848	0.899	0.747	0.823	0.854	0.901	3.45	4.143	158.932	414.018

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.32
HGNC	HGNC:13999
MGI	MGI:1930121
EntrezGene (human)	GeneID:63977 (SSTAR profile)
EntrezGene (mouse)	GeneID:114604 (SSTAR profile)
UniProt ID (human)	PRD15_HUMAN
UniProt ID (mouse)	PRD15_MOUSE
UniProt AC (human)	P57071 (TFClass)
UniProt AC (mouse)	E9Q8T2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 8 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	PRD15.H12INVITRO.0.P.D.pcm
PWM	PRD15.H12INVITRO.0.P.D.pwm
PFM	PRD15.H12INVITRO.0.P.D.pfm
Alignment	PRD15.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	PRD15.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	PRD15.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	PRD15.H12INVITRO.0.P.D_meme_format.meme
Transfac format	PRD15.H12INVITRO.0.P.D_transfac_format.txt
Homer format	PRD15.H12INVITRO.0.P.D_homer_format_0.001.txt PRD15.H12INVITRO.0.P.D_homer_format_0.0005.txt PRD15.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	210.0	187.0	460.0	138.0
02	114.0	284.0	444.0	153.0
03	916.0	21.0	53.0	5.0
04	940.0	4.0	49.0	2.0
05	714.0	23.0	228.0	30.0
06	630.0	121.0	162.0	82.0
07	81.0	642.0	117.0	155.0
08	144.0	669.0	161.0	21.0
09	134.0	369.0	8.0	484.0
10	6.0	2.0	986.0	1.0
11	43.0	7.0	935.0	10.0
12	546.0	207.0	147.0	95.0
13	279.0	213.0	394.0	109.0
14	191.0	349.0	155.0	300.0
15	166.0	155.0	485.0	189.0
16	130.0	118.0	648.0	99.0
17	408.0	114.0	397.0	76.0
18	268.0	144.0	378.0	205.0

PFM

	A	C	G	T
01	0.211	0.188	0.462	0.139
02	0.115	0.285	0.446	0.154
03	0.921	0.021	0.053	0.005
04	0.945	0.004	0.049	0.002
05	0.718	0.023	0.229	0.03
06	0.633	0.122	0.163	0.082
07	0.081	0.645	0.118	0.156
08	0.145	0.672	0.162	0.021
09	0.135	0.371	0.008	0.486
10	0.006	0.002	0.991	0.001
11	0.043	0.007	0.94	0.01
12	0.549	0.208	0.148	0.095
13	0.28	0.214	0.396	0.11
14	0.192	0.351	0.156	0.302
15	0.167	0.156	0.487	0.19
16	0.131	0.119	0.651	0.099
17	0.41	0.115	0.399	0.076
18	0.269	0.145	0.38	0.206

PWM

	A	C	G	T
01	-0.168	-0.283	0.612	-0.584
02	-0.772	0.132	0.576	-0.482
03	1.299	-2.4	-1.521	-3.617
04	1.324	-3.778	-1.597	-4.208
05	1.05	-2.316	-0.086	-2.066
06	0.925	-0.713	-0.425	-1.096
07	-1.108	0.944	-0.747	-0.469
08	-0.542	0.985	-0.431	-2.4
09	-0.613	0.392	-3.249	0.662
10	-3.479	-4.208	1.372	-4.521
11	-1.723	-3.357	1.319	-3.062
12	0.782	-0.182	-0.521	-0.951
13	0.114	-0.154	0.457	-0.816
14	-0.262	0.337	-0.469	0.186
15	-0.401	-0.469	0.664	-0.273
16	-0.643	-0.738	0.953	-0.911
17	0.492	-0.772	0.465	-1.17
18	0.074	-0.542	0.416	-0.192

Standard thresholds

P-value	Threshold
0.001	4.31086
0.0005	5.26916
0.0001	7.20801