MotifPRD14.H12INVIVO.0.P.B
Gene (human)PRDM14
(GeneCards)
Gene synonyms (human)
Gene (mouse)Prdm14
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusnndSWTAGRGMMShn
GC content48.78%
Information content (bits; total / per base)10.267 / 0.684
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.867 0.944 0.814 0.888 0.834 0.913 3.49 3.878 184.409 243.0
Mouse 4 (26) 0.864 0.892 0.767 0.809 0.827 0.859 2.886 3.049 128.142 164.796
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.35
HGNCHGNC:14001
MGIMGI:3588194
EntrezGene (human)GeneID:63978
(SSTAR profile)
EntrezGene (mouse)GeneID:383491
(SSTAR profile)
UniProt ID (human)PRD14_HUMAN
UniProt ID (mouse)PRD14_MOUSE
UniProt AC (human)Q9GZV8
(TFClass)
UniProt AC (mouse)E9Q3T6
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 4 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01205.0214.0388.0189.0
02330.0156.0287.0223.0
03355.067.0401.0173.0
04100.0225.0597.074.0
05150.061.056.0729.0
0611.09.014.0962.0
07976.03.011.06.0
0896.065.0833.02.0
09643.014.0300.039.0
1075.055.0837.029.0
11628.0206.037.0125.0
12214.0623.054.0105.0
1358.0700.0161.077.0
14151.0357.0105.0383.0
15288.0176.0275.0257.0
PFM
ACGT
010.2060.2150.390.19
020.3310.1570.2880.224
030.3560.0670.4030.174
040.10.2260.5990.074
050.1510.0610.0560.732
060.0110.0090.0140.966
070.980.0030.0110.006
080.0960.0650.8360.002
090.6460.0140.3010.039
100.0750.0550.840.029
110.6310.2070.0370.126
120.2150.6260.0540.105
130.0580.7030.1620.077
140.1520.3580.1050.385
150.2890.1770.2760.258
PWM
ACGT
01-0.193-0.150.441-0.274
020.28-0.4640.141-0.109
030.353-1.2940.474-0.361
04-0.902-0.1010.87-1.197
05-0.502-1.386-1.4691.07
06-2.981-3.152-2.7691.346
071.361-3.971-2.981-3.48
08-0.942-1.3241.203-4.209
090.944-2.7690.185-1.817
10-1.184-1.4861.208-2.099
110.921-0.188-1.868-0.682
12-0.150.913-1.504-0.854
13-1.4351.029-0.432-1.158
14-0.4960.358-0.8540.428
150.145-0.3440.0990.031
Standard thresholds
P-value Threshold
0.001 4.68811
0.0005 5.52901
0.0001 7.23861