PRD14.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PRD14.H12INVITRO.0.P.D
Gene (human)	PRDM14 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Prdm14
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	nndSWTAGRGMMShn
GC content	48.78%
Information content (bits; total / per base)	10.267 / 0.684
Data sources	ChIP-Seq
Aligned words	996

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (13)	0.867	0.944	0.814	0.888	0.834	0.913	3.49	3.878	184.409	243.0
Mouse	4 (26)	0.864	0.892	0.767	0.809	0.827	0.859	2.886	3.049	128.142	164.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.35
HGNC	HGNC:14001
MGI	MGI:3588194
EntrezGene (human)	GeneID:63978 (SSTAR profile)
EntrezGene (mouse)	GeneID:383491 (SSTAR profile)
UniProt ID (human)	PRD14_HUMAN
UniProt ID (mouse)	PRD14_MOUSE
UniProt AC (human)	Q9GZV8 (TFClass)
UniProt AC (mouse)	E9Q3T6 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 4 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	PRD14.H12INVITRO.0.P.D.pcm
PWM	PRD14.H12INVITRO.0.P.D.pwm
PFM	PRD14.H12INVITRO.0.P.D.pfm
Alignment	PRD14.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	PRD14.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	PRD14.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	PRD14.H12INVITRO.0.P.D_meme_format.meme
Transfac format	PRD14.H12INVITRO.0.P.D_transfac_format.txt
Homer format	PRD14.H12INVITRO.0.P.D_homer_format_0.001.txt PRD14.H12INVITRO.0.P.D_homer_format_0.0005.txt PRD14.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	205.0	214.0	388.0	189.0
02	330.0	156.0	287.0	223.0
03	355.0	67.0	401.0	173.0
04	100.0	225.0	597.0	74.0
05	150.0	61.0	56.0	729.0
06	11.0	9.0	14.0	962.0
07	976.0	3.0	11.0	6.0
08	96.0	65.0	833.0	2.0
09	643.0	14.0	300.0	39.0
10	75.0	55.0	837.0	29.0
11	628.0	206.0	37.0	125.0
12	214.0	623.0	54.0	105.0
13	58.0	700.0	161.0	77.0
14	151.0	357.0	105.0	383.0
15	288.0	176.0	275.0	257.0

PFM

	A	C	G	T
01	0.206	0.215	0.39	0.19
02	0.331	0.157	0.288	0.224
03	0.356	0.067	0.403	0.174
04	0.1	0.226	0.599	0.074
05	0.151	0.061	0.056	0.732
06	0.011	0.009	0.014	0.966
07	0.98	0.003	0.011	0.006
08	0.096	0.065	0.836	0.002
09	0.646	0.014	0.301	0.039
10	0.075	0.055	0.84	0.029
11	0.631	0.207	0.037	0.126
12	0.215	0.626	0.054	0.105
13	0.058	0.703	0.162	0.077
14	0.152	0.358	0.105	0.385
15	0.289	0.177	0.276	0.258

PWM

	A	C	G	T
01	-0.193	-0.15	0.441	-0.274
02	0.28	-0.464	0.141	-0.109
03	0.353	-1.294	0.474	-0.361
04	-0.902	-0.101	0.87	-1.197
05	-0.502	-1.386	-1.469	1.07
06	-2.981	-3.152	-2.769	1.346
07	1.361	-3.971	-2.981	-3.48
08	-0.942	-1.324	1.203	-4.209
09	0.944	-2.769	0.185	-1.817
10	-1.184	-1.486	1.208	-2.099
11	0.921	-0.188	-1.868	-0.682
12	-0.15	0.913	-1.504	-0.854
13	-1.435	1.029	-0.432	-1.158
14	-0.496	0.358	-0.854	0.428
15	0.145	-0.344	0.099	0.031

Standard thresholds

P-value	Threshold
0.001	4.68811
0.0005	5.52901
0.0001	7.23861