| Motif | PRD13.H12INVITRO.0.P.D |
| Gene (human) | PRDM13 (GeneCards) |
| Gene synonyms (human) | PFM10 |
| Gene (mouse) | Prdm13 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PRD13.H12INVITRO.0.P.D |
| Gene (human) | PRDM13 (GeneCards) |
| Gene synonyms (human) | PFM10 |
| Gene (mouse) | Prdm13 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | RSCACCWGYhv |
| GC content | 66.77% |
| Information content (bits; total / per base) | 11.749 / 1.068 |
| Data sources | ChIP-Seq |
| Aligned words | 151 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 2 (11) | 0.698 | 0.903 | 0.64 | 0.846 | 0.666 | 0.915 | 2.37 | 4.102 | 19.854 | 42.131 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.12 |
| HGNC | HGNC:13998 |
| MGI | MGI:2448528 |
| EntrezGene (human) | GeneID:59336 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:230025 (SSTAR profile) |
| UniProt ID (human) | PRD13_HUMAN |
| UniProt ID (mouse) | PRD13_MOUSE |
| UniProt AC (human) | Q9H4Q3 (TFClass) |
| UniProt AC (mouse) | E9PZZ1 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 2 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PRD13.H12INVITRO.0.P.D.pcm |
| PWM | PRD13.H12INVITRO.0.P.D.pwm |
| PFM | PRD13.H12INVITRO.0.P.D.pfm |
| Alignment | PRD13.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | PRD13.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | PRD13.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | PRD13.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | PRD13.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 26.0 | 23.0 | 94.0 | 8.0 |
| 02 | 8.0 | 116.0 | 25.0 | 2.0 |
| 03 | 4.0 | 126.0 | 13.0 | 8.0 |
| 04 | 143.0 | 3.0 | 2.0 | 3.0 |
| 05 | 2.0 | 147.0 | 1.0 | 1.0 |
| 06 | 0.0 | 148.0 | 3.0 | 0.0 |
| 07 | 73.0 | 7.0 | 0.0 | 71.0 |
| 08 | 3.0 | 0.0 | 148.0 | 0.0 |
| 09 | 7.0 | 101.0 | 4.0 | 39.0 |
| 10 | 32.0 | 50.0 | 4.0 | 65.0 |
| 11 | 44.0 | 33.0 | 61.0 | 13.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.172 | 0.152 | 0.623 | 0.053 |
| 02 | 0.053 | 0.768 | 0.166 | 0.013 |
| 03 | 0.026 | 0.834 | 0.086 | 0.053 |
| 04 | 0.947 | 0.02 | 0.013 | 0.02 |
| 05 | 0.013 | 0.974 | 0.007 | 0.007 |
| 06 | 0.0 | 0.98 | 0.02 | 0.0 |
| 07 | 0.483 | 0.046 | 0.0 | 0.47 |
| 08 | 0.02 | 0.0 | 0.98 | 0.0 |
| 09 | 0.046 | 0.669 | 0.026 | 0.258 |
| 10 | 0.212 | 0.331 | 0.026 | 0.43 |
| 11 | 0.291 | 0.219 | 0.404 | 0.086 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.358 | -0.475 | 0.893 | -1.439 |
| 02 | -1.439 | 1.101 | -0.396 | -2.484 |
| 03 | -2.005 | 1.183 | -1.007 | -1.439 |
| 04 | 1.308 | -2.216 | -2.484 | -2.216 |
| 05 | -2.484 | 1.335 | -2.851 | -2.851 |
| 06 | -3.437 | 1.342 | -2.216 | -3.437 |
| 07 | 0.644 | -1.553 | -3.437 | 0.617 |
| 08 | -2.216 | -3.437 | 1.342 | -3.437 |
| 09 | -1.553 | 0.964 | -2.005 | 0.032 |
| 10 | -0.159 | 0.273 | -2.005 | 0.53 |
| 11 | 0.149 | -0.13 | 0.468 | -1.007 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.468705 |
| 0.0005 | 5.397955 |
| 0.0001 | 7.27742 |