MotifPRD13.H12CORE.0.P.B
Gene (human)PRDM13
(GeneCards)
Gene synonyms (human)PFM10
Gene (mouse)Prdm13
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length11
ConsensusRSCACCWGYhv
GC content66.77%
Information content (bits; total / per base)11.749 / 1.068
Data sourcesChIP-Seq
Aligned words151

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (11) 0.698 0.903 0.64 0.846 0.666 0.915 2.37 4.102 19.854 42.131
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.12
HGNCHGNC:13998
MGIMGI:2448528
EntrezGene (human)GeneID:59336
(SSTAR profile)
EntrezGene (mouse)GeneID:230025
(SSTAR profile)
UniProt ID (human)PRD13_HUMAN
UniProt ID (mouse)PRD13_MOUSE
UniProt AC (human)Q9H4Q3
(TFClass)
UniProt AC (mouse)E9PZZ1
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0126.023.094.08.0
028.0116.025.02.0
034.0126.013.08.0
04143.03.02.03.0
052.0147.01.01.0
060.0148.03.00.0
0773.07.00.071.0
083.00.0148.00.0
097.0101.04.039.0
1032.050.04.065.0
1144.033.061.013.0
PFM
ACGT
010.1720.1520.6230.053
020.0530.7680.1660.013
030.0260.8340.0860.053
040.9470.020.0130.02
050.0130.9740.0070.007
060.00.980.020.0
070.4830.0460.00.47
080.020.00.980.0
090.0460.6690.0260.258
100.2120.3310.0260.43
110.2910.2190.4040.086
PWM
ACGT
01-0.358-0.4750.893-1.439
02-1.4391.101-0.396-2.484
03-2.0051.183-1.007-1.439
041.308-2.216-2.484-2.216
05-2.4841.335-2.851-2.851
06-3.4371.342-2.216-3.437
070.644-1.553-3.4370.617
08-2.216-3.4371.342-3.437
09-1.5530.964-2.0050.032
10-0.1590.273-2.0050.53
110.149-0.130.468-1.007
Standard thresholds
P-value Threshold
0.001 4.468705
0.0005 5.397955
0.0001 7.27742