| Motif | PPARG.H12RSNP.1.P.B |
| Gene (human) | PPARG (GeneCards) |
| Gene synonyms (human) | NR1C3 |
| Gene (mouse) | Pparg |
| Gene synonyms (mouse) | Nr1c3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | PPARG.H12RSNP.1.P.B |
| Gene (human) | PPARG (GeneCards) |
| Gene synonyms (human) | NR1C3 |
| Gene (mouse) | Pparg |
| Gene synonyms (mouse) | Nr1c3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 9 |
| Consensus | SARAGGKSA |
| GC content | 47.31% |
| Information content (bits; total / per base) | 9.733 / 1.081 |
| Data sources | ChIP-Seq |
| Aligned words | 997 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 18 (110) | 0.739 | 0.822 | 0.586 | 0.72 | 0.677 | 0.764 | 1.714 | 2.235 | 60.812 | 133.201 |
| Mouse | 67 (374) | 0.735 | 0.825 | 0.586 | 0.704 | 0.692 | 0.773 | 1.821 | 2.24 | 70.495 | 160.745 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.062 | 2.755 | 0.104 | 0.111 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Thyroid hormone receptor-related {2.1.2} (TFClass) |
| TF subfamily | PPAR (NR1C) {2.1.2.5} (TFClass) |
| TFClass ID | TFClass: 2.1.2.5.3 |
| HGNC | HGNC:9236 |
| MGI | MGI:97747 |
| EntrezGene (human) | GeneID:5468 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19016 (SSTAR profile) |
| UniProt ID (human) | PPARG_HUMAN |
| UniProt ID (mouse) | PPARG_MOUSE |
| UniProt AC (human) | P37231 (TFClass) |
| UniProt AC (mouse) | P37238 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 18 human, 67 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PPARG.H12RSNP.1.P.B.pcm |
| PWM | PPARG.H12RSNP.1.P.B.pwm |
| PFM | PPARG.H12RSNP.1.P.B.pfm |
| Alignment | PPARG.H12RSNP.1.P.B.words.tsv |
| Threshold to P-value map | PPARG.H12RSNP.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | PPARG.H12RSNP.1.P.B_jaspar_format.txt |
| MEME format | PPARG.H12RSNP.1.P.B_meme_format.meme |
| Transfac format | PPARG.H12RSNP.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 66.0 | 623.0 | 191.0 | 117.0 |
| 02 | 954.0 | 13.0 | 8.0 | 22.0 |
| 03 | 683.0 | 30.0 | 271.0 | 13.0 |
| 04 | 919.0 | 0.0 | 75.0 | 3.0 |
| 05 | 36.0 | 4.0 | 939.0 | 18.0 |
| 06 | 22.0 | 10.0 | 836.0 | 129.0 |
| 07 | 31.0 | 56.0 | 254.0 | 656.0 |
| 08 | 59.0 | 607.0 | 209.0 | 122.0 |
| 09 | 827.0 | 59.0 | 60.0 | 51.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.066 | 0.625 | 0.192 | 0.117 |
| 02 | 0.957 | 0.013 | 0.008 | 0.022 |
| 03 | 0.685 | 0.03 | 0.272 | 0.013 |
| 04 | 0.922 | 0.0 | 0.075 | 0.003 |
| 05 | 0.036 | 0.004 | 0.942 | 0.018 |
| 06 | 0.022 | 0.01 | 0.839 | 0.129 |
| 07 | 0.031 | 0.056 | 0.255 | 0.658 |
| 08 | 0.059 | 0.609 | 0.21 | 0.122 |
| 09 | 0.829 | 0.059 | 0.06 | 0.051 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.31 | 0.912 | -0.264 | -0.749 |
| 02 | 1.337 | -2.836 | -3.251 | -2.359 |
| 03 | 1.004 | -2.068 | 0.083 | -2.836 |
| 04 | 1.3 | -4.979 | -1.185 | -3.972 |
| 05 | -1.895 | -3.78 | 1.321 | -2.543 |
| 06 | -2.359 | -3.064 | 1.205 | -0.652 |
| 07 | -2.037 | -1.47 | 0.019 | 0.963 |
| 08 | -1.419 | 0.886 | -0.175 | -0.707 |
| 09 | 1.195 | -1.419 | -1.403 | -1.56 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.79867 |
| 0.0005 | 5.62821 |
| 0.0001 | 7.351165 |