| Motif | PPARG.H12INVIVO.1.P.B |
| Gene (human) | PPARG (GeneCards) |
| Gene synonyms (human) | NR1C3 |
| Gene (mouse) | Pparg |
| Gene synonyms (mouse) | Nr1c3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | PPARG.H12INVIVO.1.P.B |
| Gene (human) | PPARG (GeneCards) |
| Gene synonyms (human) | NR1C3 |
| Gene (mouse) | Pparg |
| Gene synonyms (mouse) | Nr1c3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 11 |
| Consensus | RbSARAGKKSM |
| GC content | 51.43% |
| Information content (bits; total / per base) | 9.263 / 0.842 |
| Data sources | ChIP-Seq |
| Aligned words | 998 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 18 (110) | 0.785 | 0.859 | 0.637 | 0.75 | 0.729 | 0.809 | 1.995 | 2.536 | 85.066 | 169.284 |
| Mouse | 67 (374) | 0.771 | 0.853 | 0.632 | 0.748 | 0.746 | 0.839 | 2.176 | 2.758 | 90.696 | 193.886 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 1.704 | 1.701 | 0.118 | 0.11 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Thyroid hormone receptor-related {2.1.2} (TFClass) |
| TF subfamily | PPAR (NR1C) {2.1.2.5} (TFClass) |
| TFClass ID | TFClass: 2.1.2.5.3 |
| HGNC | HGNC:9236 |
| MGI | MGI:97747 |
| EntrezGene (human) | GeneID:5468 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19016 (SSTAR profile) |
| UniProt ID (human) | PPARG_HUMAN |
| UniProt ID (mouse) | PPARG_MOUSE |
| UniProt AC (human) | P37231 (TFClass) |
| UniProt AC (mouse) | P37238 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 18 human, 67 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PPARG.H12INVIVO.1.P.B.pcm |
| PWM | PPARG.H12INVIVO.1.P.B.pwm |
| PFM | PPARG.H12INVIVO.1.P.B.pfm |
| Alignment | PPARG.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | PPARG.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | PPARG.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | PPARG.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | PPARG.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 193.0 | 51.0 | 681.0 | 73.0 |
| 02 | 170.0 | 185.0 | 410.0 | 233.0 |
| 03 | 80.0 | 648.0 | 191.0 | 79.0 |
| 04 | 944.0 | 24.0 | 13.0 | 17.0 |
| 05 | 624.0 | 50.0 | 313.0 | 11.0 |
| 06 | 896.0 | 2.0 | 83.0 | 17.0 |
| 07 | 78.0 | 5.0 | 892.0 | 23.0 |
| 08 | 60.0 | 11.0 | 764.0 | 163.0 |
| 09 | 47.0 | 123.0 | 289.0 | 539.0 |
| 10 | 84.0 | 601.0 | 168.0 | 145.0 |
| 11 | 781.0 | 90.0 | 52.0 | 75.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.193 | 0.051 | 0.682 | 0.073 |
| 02 | 0.17 | 0.185 | 0.411 | 0.233 |
| 03 | 0.08 | 0.649 | 0.191 | 0.079 |
| 04 | 0.946 | 0.024 | 0.013 | 0.017 |
| 05 | 0.625 | 0.05 | 0.314 | 0.011 |
| 06 | 0.898 | 0.002 | 0.083 | 0.017 |
| 07 | 0.078 | 0.005 | 0.894 | 0.023 |
| 08 | 0.06 | 0.011 | 0.766 | 0.163 |
| 09 | 0.047 | 0.123 | 0.29 | 0.54 |
| 10 | 0.084 | 0.602 | 0.168 | 0.145 |
| 11 | 0.783 | 0.09 | 0.052 | 0.075 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.255 | -1.561 | 1.0 | -1.213 |
| 02 | -0.38 | -0.297 | 0.494 | -0.068 |
| 03 | -1.123 | 0.95 | -0.265 | -1.135 |
| 04 | 1.326 | -2.279 | -2.837 | -2.596 |
| 05 | 0.913 | -1.58 | 0.225 | -2.983 |
| 06 | 1.274 | -4.211 | -1.087 | -2.596 |
| 07 | -1.148 | -3.62 | 1.269 | -2.318 |
| 08 | -1.404 | -2.983 | 1.114 | -0.422 |
| 09 | -1.64 | -0.7 | 0.146 | 0.767 |
| 10 | -1.075 | 0.875 | -0.392 | -0.538 |
| 11 | 1.136 | -1.008 | -1.542 | -1.186 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.848725 |
| 0.0005 | 5.628015 |
| 0.0001 | 7.18532 |