MotifPPARA.H12INVIVO.0.P.B
Gene (human)PPARA
(GeneCards)
Gene synonyms (human)NR1C1, PPAR
Gene (mouse)Ppara
Gene synonyms (mouse)Nr1c1, Ppar
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length17
ConsensushdbdRGGbvARAGKKSW
GC content48.98%
Information content (bits; total / per base)12.081 / 0.711
Data sourcesChIP-Seq
Aligned words1011

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 19 (106) 0.845 0.937 0.791 0.907 0.836 0.921 3.4 4.47 116.94 350.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyThyroid hormone receptor-related {2.1.2} (TFClass)
TF subfamilyPPAR (NR1C) {2.1.2.5} (TFClass)
TFClass IDTFClass: 2.1.2.5.1
HGNCHGNC:9232
MGIMGI:104740
EntrezGene (human)GeneID:5465
(SSTAR profile)
EntrezGene (mouse)GeneID:19013
(SSTAR profile)
UniProt ID (human)PPARA_HUMAN
UniProt ID (mouse)PPARA_MOUSE
UniProt AC (human)Q07869
(TFClass)
UniProt AC (mouse)P23204
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 19 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01515.0237.0107.0152.0
02565.081.0124.0241.0
03152.0385.0287.0187.0
04145.0118.0148.0600.0
05479.026.0461.045.0
0683.05.0816.0107.0
0791.035.0841.044.0
08113.0162.0339.0397.0
09117.0551.0231.0112.0
10899.044.042.026.0
11686.042.0228.055.0
12847.06.0142.016.0
1351.04.0920.036.0
1452.017.0761.0181.0
1553.0108.0208.0642.0
1654.0637.0179.0141.0
17798.054.073.086.0
PFM
ACGT
010.5090.2340.1060.15
020.5590.080.1230.238
030.150.3810.2840.185
040.1430.1170.1460.593
050.4740.0260.4560.045
060.0820.0050.8070.106
070.090.0350.8320.044
080.1120.160.3350.393
090.1160.5450.2280.111
100.8890.0440.0420.026
110.6790.0420.2260.054
120.8380.0060.140.016
130.050.0040.910.036
140.0510.0170.7530.179
150.0520.1070.2060.635
160.0530.630.1770.139
170.7890.0530.0720.085
PWM
ACGT
010.708-0.064-0.85-0.504
020.801-1.124-0.705-0.047
03-0.5040.4190.126-0.299
04-0.551-0.754-0.530.861
050.636-2.2170.598-1.695
06-1.1-3.6331.167-0.85
07-1.01-1.9361.197-1.716
08-0.797-0.4410.2920.449
09-0.7620.776-0.089-0.805
101.264-1.716-1.761-2.217
110.994-1.761-0.102-1.501
121.205-3.494-0.571-2.664
13-1.574-3.7941.287-1.909
14-1.555-2.6091.098-0.331
15-1.537-0.841-0.1930.928
16-1.5190.92-0.342-0.578
171.145-1.519-1.225-1.065
Standard thresholds
P-value Threshold
0.001 4.24131
0.0005 5.14176
0.0001 7.03421