MotifPPARA.H12INVITRO.1.P.D
Gene (human)PPARA
(GeneCards)
Gene synonyms (human)NR1C1, PPAR
Gene (mouse)Ppara
Gene synonyms (mouse)Nr1c1, Ppar
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length9
ConsensusSARAGGKSA
GC content47.99%
Information content (bits; total / per base)9.64 / 1.071
Data sourcesChIP-Seq
Aligned words988

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 19 (106) 0.789 0.836 0.653 0.716 0.748 0.795 2.11 2.299 70.03 185.097
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classNuclear receptors with C4 zinc fingers {2.1} (TFClass)
TF familyThyroid hormone receptor-related {2.1.2} (TFClass)
TF subfamilyPPAR (NR1C) {2.1.2.5} (TFClass)
TFClass IDTFClass: 2.1.2.5.1
HGNCHGNC:9232
MGIMGI:104740
EntrezGene (human)GeneID:5465
(SSTAR profile)
EntrezGene (mouse)GeneID:19013
(SSTAR profile)
UniProt ID (human)PPARA_HUMAN
UniProt ID (mouse)PPARA_MOUSE
UniProt AC (human)Q07869
(TFClass)
UniProt AC (mouse)P23204
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 19 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0180.0602.0220.086.0
02870.041.028.049.0
03623.071.0273.021.0
04890.01.085.012.0
0524.04.0942.018.0
0628.014.0769.0177.0
0728.070.0199.0691.0
0817.0756.0125.090.0
09883.028.039.038.0
PFM
ACGT
010.0810.6090.2230.087
020.8810.0410.0280.05
030.6310.0720.2760.021
040.9010.0010.0860.012
050.0240.0040.9530.018
060.0280.0140.7780.179
070.0280.0710.2010.699
080.0170.7650.1270.091
090.8940.0280.0390.038
PWM
ACGT
01-1.1130.887-0.115-1.042
021.254-1.762-2.124-1.59
030.921-1.230.099-2.393
041.277-4.514-1.054-2.897
05-2.269-3.7721.333-2.535
06-2.124-2.7611.131-0.331
07-2.124-1.244-0.2141.024
08-2.5871.114-0.674-0.998
091.269-2.124-1.81-1.834
Standard thresholds
P-value Threshold
0.001 4.798475
0.0005 5.60825
0.0001 7.143075