| Motif | PPARA.H12INVITRO.1.P.D |
| Gene (human) | PPARA (GeneCards) |
| Gene synonyms (human) | NR1C1, PPAR |
| Gene (mouse) | Ppara |
| Gene synonyms (mouse) | Nr1c1, Ppar |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | PPARA.H12INVITRO.1.P.D |
| Gene (human) | PPARA (GeneCards) |
| Gene synonyms (human) | NR1C1, PPAR |
| Gene (mouse) | Ppara |
| Gene synonyms (mouse) | Nr1c1, Ppar |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 9 |
| Consensus | SARAGGKSA |
| GC content | 47.99% |
| Information content (bits; total / per base) | 9.64 / 1.071 |
| Data sources | ChIP-Seq |
| Aligned words | 988 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 19 (106) | 0.789 | 0.836 | 0.653 | 0.716 | 0.748 | 0.795 | 2.11 | 2.299 | 70.03 | 185.097 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | Nuclear receptors with C4 zinc fingers {2.1} (TFClass) |
| TF family | Thyroid hormone receptor-related {2.1.2} (TFClass) |
| TF subfamily | PPAR (NR1C) {2.1.2.5} (TFClass) |
| TFClass ID | TFClass: 2.1.2.5.1 |
| HGNC | HGNC:9232 |
| MGI | MGI:104740 |
| EntrezGene (human) | GeneID:5465 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:19013 (SSTAR profile) |
| UniProt ID (human) | PPARA_HUMAN |
| UniProt ID (mouse) | PPARA_MOUSE |
| UniProt AC (human) | Q07869 (TFClass) |
| UniProt AC (mouse) | P23204 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 19 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PPARA.H12INVITRO.1.P.D.pcm |
| PWM | PPARA.H12INVITRO.1.P.D.pwm |
| PFM | PPARA.H12INVITRO.1.P.D.pfm |
| Alignment | PPARA.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | PPARA.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | PPARA.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | PPARA.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | PPARA.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 80.0 | 602.0 | 220.0 | 86.0 |
| 02 | 870.0 | 41.0 | 28.0 | 49.0 |
| 03 | 623.0 | 71.0 | 273.0 | 21.0 |
| 04 | 890.0 | 1.0 | 85.0 | 12.0 |
| 05 | 24.0 | 4.0 | 942.0 | 18.0 |
| 06 | 28.0 | 14.0 | 769.0 | 177.0 |
| 07 | 28.0 | 70.0 | 199.0 | 691.0 |
| 08 | 17.0 | 756.0 | 125.0 | 90.0 |
| 09 | 883.0 | 28.0 | 39.0 | 38.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.081 | 0.609 | 0.223 | 0.087 |
| 02 | 0.881 | 0.041 | 0.028 | 0.05 |
| 03 | 0.631 | 0.072 | 0.276 | 0.021 |
| 04 | 0.901 | 0.001 | 0.086 | 0.012 |
| 05 | 0.024 | 0.004 | 0.953 | 0.018 |
| 06 | 0.028 | 0.014 | 0.778 | 0.179 |
| 07 | 0.028 | 0.071 | 0.201 | 0.699 |
| 08 | 0.017 | 0.765 | 0.127 | 0.091 |
| 09 | 0.894 | 0.028 | 0.039 | 0.038 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.113 | 0.887 | -0.115 | -1.042 |
| 02 | 1.254 | -1.762 | -2.124 | -1.59 |
| 03 | 0.921 | -1.23 | 0.099 | -2.393 |
| 04 | 1.277 | -4.514 | -1.054 | -2.897 |
| 05 | -2.269 | -3.772 | 1.333 | -2.535 |
| 06 | -2.124 | -2.761 | 1.131 | -0.331 |
| 07 | -2.124 | -1.244 | -0.214 | 1.024 |
| 08 | -2.587 | 1.114 | -0.674 | -0.998 |
| 09 | 1.269 | -2.124 | -1.81 | -1.834 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.798475 |
| 0.0005 | 5.60825 |
| 0.0001 | 7.143075 |