MotifPO6F2.H12INVIVO.0.S.D
Gene (human)POU6F2
(GeneCards)
Gene synonyms (human)RPF1
Gene (mouse)Pou6f2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnvnTAATTARbbn
GC content30.51%
Information content (bits; total / per base)12.557 / 0.966
Data sourcesHT-SELEX
Aligned words403

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 3 experiments median 0.553 0.546 0.522 0.524 0.507 0.513
best 0.686 0.671 0.589 0.593 0.536 0.552
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPOU {3.1.10} (TFClass)
TF subfamilyPOU6 {3.1.10.6} (TFClass)
TFClass IDTFClass: 3.1.10.6.2
HGNCHGNC:21694
MGIMGI:2443631
EntrezGene (human)GeneID:11281
(SSTAR profile)
EntrezGene (mouse)GeneID:218030
(SSTAR profile)
UniProt ID (human)PO6F2_HUMAN
UniProt ID (mouse)PO6F2_MOUSE
UniProt AC (human)P78424
(TFClass)
UniProt AC (mouse)Q8BJI4
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 0
PCM
ACGT
01104.575.5120.5102.5
0272.7567.75196.7565.75
0369.074.0144.0116.0
043.00.016.0384.0
05402.01.00.00.0
06403.00.00.00.0
070.00.00.0403.0
080.00.041.0362.0
09402.01.00.00.0
10132.05.0259.07.0
1139.0133.099.0132.0
1267.7569.75114.75150.75
13118.25108.2572.25104.25
PFM
ACGT
010.2590.1870.2990.254
020.1810.1680.4880.163
030.1710.1840.3570.288
040.0070.00.040.953
050.9980.0020.00.0
061.00.00.00.0
070.00.00.01.0
080.00.00.1020.898
090.9980.0020.00.0
100.3280.0120.6430.017
110.0970.330.2460.328
120.1680.1730.2850.374
130.2930.2690.1790.259
PWM
ACGT
010.036-0.2840.1770.017
02-0.32-0.390.662-0.419
03-0.372-0.3030.3530.139
04-3.123-4.222-1.7651.327
051.373-3.711-4.222-4.222
061.375-4.222-4.222-4.222
07-4.222-4.222-4.2221.375
08-4.222-4.222-0.8781.268
091.373-3.711-4.222-4.222
100.267-2.7560.935-2.487
11-0.9260.274-0.0170.267
12-0.39-0.3610.1280.398
130.1580.071-0.3270.034
Standard thresholds
P-value Threshold
0.001 3.60366
0.0005 4.628215
0.0001 7.687795