PO6F2.H12INVIVO.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PO6F2.H12INVIVO.0.S.D
Gene (human)	POU6F2 (GeneCards)
Gene synonyms (human)	RPF1
Gene (mouse)	Pou6f2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	nvnTAATTARbbn
GC content	30.51%
Information content (bits; total / per base)	12.557 / 0.966
Data sources	HT-SELEX
Aligned words	403

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 3 experiments	median	0.553	0.546	0.522	0.524	0.507	0.513
Non-Methyl HT-SELEX, 3 experiments	best	0.686	0.671	0.589	0.593	0.536	0.552

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Homeo domain factors {3.1} (TFClass)
TF family	POU {3.1.10} (TFClass)
TF subfamily	POU6 {3.1.10.6} (TFClass)
TFClass ID	TFClass: 3.1.10.6.2
HGNC	HGNC:21694
MGI	MGI:2443631
EntrezGene (human)	GeneID:11281 (SSTAR profile)
EntrezGene (mouse)	GeneID:218030 (SSTAR profile)
UniProt ID (human)	PO6F2_HUMAN
UniProt ID (mouse)	PO6F2_MOUSE
UniProt AC (human)	P78424 (TFClass)
UniProt AC (mouse)	Q8BJI4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3
Methyl-HT-SELEX	0

PCM	PO6F2.H12INVIVO.0.S.D.pcm
PWM	PO6F2.H12INVIVO.0.S.D.pwm
PFM	PO6F2.H12INVIVO.0.S.D.pfm
Alignment	PO6F2.H12INVIVO.0.S.D.words.tsv
Threshold to P-value map	PO6F2.H12INVIVO.0.S.D.thr
Motif in other formats
JASPAR format	PO6F2.H12INVIVO.0.S.D_jaspar_format.txt
MEME format	PO6F2.H12INVIVO.0.S.D_meme_format.meme
Transfac format	PO6F2.H12INVIVO.0.S.D_transfac_format.txt
Homer format	PO6F2.H12INVIVO.0.S.D_homer_format_0.001.txt PO6F2.H12INVIVO.0.S.D_homer_format_0.0005.txt PO6F2.H12INVIVO.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	104.5	75.5	120.5	102.5
02	72.75	67.75	196.75	65.75
03	69.0	74.0	144.0	116.0
04	3.0	0.0	16.0	384.0
05	402.0	1.0	0.0	0.0
06	403.0	0.0	0.0	0.0
07	0.0	0.0	0.0	403.0
08	0.0	0.0	41.0	362.0
09	402.0	1.0	0.0	0.0
10	132.0	5.0	259.0	7.0
11	39.0	133.0	99.0	132.0
12	67.75	69.75	114.75	150.75
13	118.25	108.25	72.25	104.25

PFM

	A	C	G	T
01	0.259	0.187	0.299	0.254
02	0.181	0.168	0.488	0.163
03	0.171	0.184	0.357	0.288
04	0.007	0.0	0.04	0.953
05	0.998	0.002	0.0	0.0
06	1.0	0.0	0.0	0.0
07	0.0	0.0	0.0	1.0
08	0.0	0.0	0.102	0.898
09	0.998	0.002	0.0	0.0
10	0.328	0.012	0.643	0.017
11	0.097	0.33	0.246	0.328
12	0.168	0.173	0.285	0.374
13	0.293	0.269	0.179	0.259

PWM

	A	C	G	T
01	0.036	-0.284	0.177	0.017
02	-0.32	-0.39	0.662	-0.419
03	-0.372	-0.303	0.353	0.139
04	-3.123	-4.222	-1.765	1.327
05	1.373	-3.711	-4.222	-4.222
06	1.375	-4.222	-4.222	-4.222
07	-4.222	-4.222	-4.222	1.375
08	-4.222	-4.222	-0.878	1.268
09	1.373	-3.711	-4.222	-4.222
10	0.267	-2.756	0.935	-2.487
11	-0.926	0.274	-0.017	0.267
12	-0.39	-0.361	0.128	0.398
13	0.158	0.071	-0.327	0.034

Standard thresholds

P-value	Threshold
0.001	3.60366
0.0005	4.628215
0.0001	7.687795