Motif | PO6F2.H12CORE.0.S.B |
Gene (human) | POU6F2 (GeneCards) |
Gene synonyms (human) | RPF1 |
Gene (mouse) | Pou6f2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | PO6F2.H12CORE.0.S.B |
Gene (human) | POU6F2 (GeneCards) |
Gene synonyms (human) | RPF1 |
Gene (mouse) | Pou6f2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nvnTAATTARbbn |
GC content | 30.51% |
Information content (bits; total / per base) | 12.557 / 0.966 |
Data sources | HT-SELEX |
Aligned words | 403 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 3 experiments | median | 0.553 | 0.546 | 0.522 | 0.524 | 0.507 | 0.513 |
best | 0.686 | 0.671 | 0.589 | 0.593 | 0.536 | 0.552 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | POU {3.1.10} (TFClass) |
TF subfamily | POU6 {3.1.10.6} (TFClass) |
TFClass ID | TFClass: 3.1.10.6.2 |
HGNC | HGNC:21694 |
MGI | MGI:2443631 |
EntrezGene (human) | GeneID:11281 (SSTAR profile) |
EntrezGene (mouse) | GeneID:218030 (SSTAR profile) |
UniProt ID (human) | PO6F2_HUMAN |
UniProt ID (mouse) | PO6F2_MOUSE |
UniProt AC (human) | P78424 (TFClass) |
UniProt AC (mouse) | Q8BJI4 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 0 |
PCM | PO6F2.H12CORE.0.S.B.pcm |
PWM | PO6F2.H12CORE.0.S.B.pwm |
PFM | PO6F2.H12CORE.0.S.B.pfm |
Alignment | PO6F2.H12CORE.0.S.B.words.tsv |
Threshold to P-value map | PO6F2.H12CORE.0.S.B.thr |
Motif in other formats | |
JASPAR format | PO6F2.H12CORE.0.S.B_jaspar_format.txt |
MEME format | PO6F2.H12CORE.0.S.B_meme_format.meme |
Transfac format | PO6F2.H12CORE.0.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 104.5 | 75.5 | 120.5 | 102.5 |
02 | 72.75 | 67.75 | 196.75 | 65.75 |
03 | 69.0 | 74.0 | 144.0 | 116.0 |
04 | 3.0 | 0.0 | 16.0 | 384.0 |
05 | 402.0 | 1.0 | 0.0 | 0.0 |
06 | 403.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 403.0 |
08 | 0.0 | 0.0 | 41.0 | 362.0 |
09 | 402.0 | 1.0 | 0.0 | 0.0 |
10 | 132.0 | 5.0 | 259.0 | 7.0 |
11 | 39.0 | 133.0 | 99.0 | 132.0 |
12 | 67.75 | 69.75 | 114.75 | 150.75 |
13 | 118.25 | 108.25 | 72.25 | 104.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.259 | 0.187 | 0.299 | 0.254 |
02 | 0.181 | 0.168 | 0.488 | 0.163 |
03 | 0.171 | 0.184 | 0.357 | 0.288 |
04 | 0.007 | 0.0 | 0.04 | 0.953 |
05 | 0.998 | 0.002 | 0.0 | 0.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 |
08 | 0.0 | 0.0 | 0.102 | 0.898 |
09 | 0.998 | 0.002 | 0.0 | 0.0 |
10 | 0.328 | 0.012 | 0.643 | 0.017 |
11 | 0.097 | 0.33 | 0.246 | 0.328 |
12 | 0.168 | 0.173 | 0.285 | 0.374 |
13 | 0.293 | 0.269 | 0.179 | 0.259 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.036 | -0.284 | 0.177 | 0.017 |
02 | -0.32 | -0.39 | 0.662 | -0.419 |
03 | -0.372 | -0.303 | 0.353 | 0.139 |
04 | -3.123 | -4.222 | -1.765 | 1.327 |
05 | 1.373 | -3.711 | -4.222 | -4.222 |
06 | 1.375 | -4.222 | -4.222 | -4.222 |
07 | -4.222 | -4.222 | -4.222 | 1.375 |
08 | -4.222 | -4.222 | -0.878 | 1.268 |
09 | 1.373 | -3.711 | -4.222 | -4.222 |
10 | 0.267 | -2.756 | 0.935 | -2.487 |
11 | -0.926 | 0.274 | -0.017 | 0.267 |
12 | -0.39 | -0.361 | 0.128 | 0.398 |
13 | 0.158 | 0.071 | -0.327 | 0.034 |
P-value | Threshold |
---|---|
0.001 | 3.60366 |
0.0005 | 4.628215 |
0.0001 | 7.687795 |