MotifPO4F3.H12INVIVO.0.SM.D
Gene (human)POU4F3
(GeneCards)
Gene synonyms (human)BRN3C
Gene (mouse)Pou4f3
Gene synonyms (mouse)Brn-3.1, Brn-3c, Brn3c
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length17
ConsensusnvvTnAATAATKhAbbn
GC content28.75%
Information content (bits; total / per base)15.003 / 0.883
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9842

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.994 0.99 0.986 0.979 0.94 0.925
best 0.998 0.998 0.996 0.993 0.989 0.984
Methyl HT-SELEX, 2 experiments median 0.995 0.992 0.989 0.983 0.962 0.953
best 0.997 0.995 0.996 0.993 0.989 0.984
Non-Methyl HT-SELEX, 4 experiments median 0.99 0.983 0.982 0.972 0.93 0.924
best 0.998 0.998 0.994 0.992 0.971 0.961
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPOU {3.1.10} (TFClass)
TF subfamilyPOU4 {3.1.10.4} (TFClass)
TFClass IDTFClass: 3.1.10.4.3
HGNCHGNC:9220
MGIMGI:102523
EntrezGene (human)GeneID:5459
(SSTAR profile)
EntrezGene (mouse)GeneID:18998
(SSTAR profile)
UniProt ID (human)PO4F3_HUMAN
UniProt ID (mouse)PO4F3_MOUSE
UniProt AC (human)Q15319
(TFClass)
UniProt AC (mouse)Q63955
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 2
PCM
ACGT
011756.52349.52378.53357.5
021780.255074.251817.251170.25
035041.01579.02266.0956.0
0438.0155.0124.09525.0
052298.01523.03627.02394.0
067575.02046.0100.0121.0
078064.0154.046.01578.0
0858.030.032.09722.0
099360.0482.00.00.0
109675.037.017.0113.0
11469.046.0111.09216.0
12277.049.02995.06521.0
132990.04245.0952.01655.0
149322.0142.0305.073.0
15930.02337.01517.05058.0
161300.01792.05022.01728.0
173390.752489.752266.751694.75
PFM
ACGT
010.1780.2390.2420.341
020.1810.5160.1850.119
030.5120.160.230.097
040.0040.0160.0130.968
050.2330.1550.3690.243
060.770.2080.010.012
070.8190.0160.0050.16
080.0060.0030.0030.988
090.9510.0490.00.0
100.9830.0040.0020.011
110.0480.0050.0110.936
120.0280.0050.3040.663
130.3040.4310.0970.168
140.9470.0140.0310.007
150.0940.2370.1540.514
160.1320.1820.510.176
170.3450.2530.230.172
PWM
ACGT
01-0.337-0.046-0.0340.311
02-0.3230.723-0.303-0.742
030.717-0.443-0.082-0.944
04-4.113-2.751-2.971.353
05-0.068-0.4790.388-0.027
061.124-0.184-3.181-2.994
071.186-2.757-3.932-0.444
08-3.71-4.334-4.2741.373
091.335-1.626-6.977-6.977
101.368-4.138-4.849-3.062
11-1.654-3.932-3.0791.32
12-2.177-3.8710.1960.974
130.1950.545-0.948-0.396
141.331-2.837-2.081-3.488
15-0.971-0.051-0.4830.72
16-0.637-0.3170.713-0.353
170.320.012-0.082-0.372
Standard thresholds
P-value Threshold
0.001 2.42221
0.0005 3.73491
0.0001 6.43291