MotifPO4F2.H12INVITRO.0.S.B
Gene (human)POU4F2
(GeneCards)
Gene synonyms (human)BRN3B
Gene (mouse)Pou4f2
Gene synonyms (mouse)Brn-3.2, Brn3b
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length17
ConsensusnnKhATTAATWATKMWn
GC content21.35%
Information content (bits; total / per base)17.202 / 1.012
Data sourcesHT-SELEX
Aligned words8097

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 4 experiments median 0.894 0.888 0.697 0.724 0.58 0.624
best 0.996 0.994 0.96 0.955 0.738 0.787
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPOU {3.1.10} (TFClass)
TF subfamilyPOU4 {3.1.10.4} (TFClass)
TFClass IDTFClass: 3.1.10.4.2
HGNCHGNC:9219
MGIMGI:102524
EntrezGene (human)GeneID:5458
(SSTAR profile)
EntrezGene (mouse)GeneID:18997
(SSTAR profile)
UniProt ID (human)PO4F2_HUMAN
UniProt ID (mouse)PO4F2_MOUSE
UniProt AC (human)Q12837
(TFClass)
UniProt AC (mouse)Q63934
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 4
Methyl-HT-SELEX 0
PCM
ACGT
012177.251816.252238.251865.25
021263.252442.251806.252585.25
03984.0831.01389.04893.0
042147.04282.0603.01065.0
057427.0202.0246.0222.0
069.010.07.08071.0
07505.030.01152.06410.0
087762.0146.01.0188.0
097803.03.018.0273.0
10132.034.037.07894.0
113227.024.061.04785.0
127974.029.015.079.0
13377.052.090.07578.0
14235.093.02281.05488.0
151888.04688.0339.01182.0
166206.0581.0626.0684.0
171858.51739.51472.53026.5
PFM
ACGT
010.2690.2240.2760.23
020.1560.3020.2230.319
030.1220.1030.1720.604
040.2650.5290.0740.132
050.9170.0250.030.027
060.0010.0010.0010.997
070.0620.0040.1420.792
080.9590.0180.00.023
090.9640.00.0020.034
100.0160.0040.0050.975
110.3990.0030.0080.591
120.9850.0040.0020.01
130.0470.0060.0110.936
140.0290.0110.2820.678
150.2330.5790.0420.146
160.7660.0720.0770.084
170.230.2150.1820.374
PWM
ACGT
010.073-0.1080.1-0.082
02-0.4710.188-0.1140.244
03-0.72-0.889-0.3760.882
040.0590.749-1.208-0.641
051.299-2.295-2.1-2.201
06-5.194-5.109-5.3891.382
07-1.385-4.141-0.5631.152
081.343-2.615-6.435-2.366
091.348-5.956-4.606-1.996
10-2.714-4.024-3.9441.36
110.466-4.346-3.4670.86
121.37-4.172-4.766-3.217
13-1.676-3.62-3.091.319
14-2.145-3.0580.1190.997
15-0.070.839-1.781-0.537
161.12-1.245-1.171-1.083
17-0.085-0.151-0.3180.402
Standard thresholds
P-value Threshold
0.001 1.16366
0.0005 2.59881
0.0001 5.59146