Motif | PO3F4.H12CORE.0.SM.B |
Gene (human) | POU3F4 (GeneCards) |
Gene synonyms (human) | BRN4, OTF9 |
Gene (mouse) | Pou3f4 |
Gene synonyms (mouse) | Brn-4, Brn4, Otf9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | PO3F4.H12CORE.0.SM.B |
Gene (human) | POU3F4 (GeneCards) |
Gene synonyms (human) | BRN4, OTF9 |
Gene (mouse) | Pou3f4 |
Gene synonyms (mouse) | Brn-4, Brn4, Otf9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 15 |
Consensus | nYTMATTWGCATAWh |
GC content | 29.74% |
Information content (bits; total / per base) | 19.548 / 1.303 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7817 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.996 | 0.995 | 0.962 | 0.956 | 0.861 | 0.86 |
best | 1.0 | 1.0 | 0.999 | 0.999 | 0.972 | 0.97 | |
Methyl HT-SELEX, 1 experiments | median | 1.0 | 1.0 | 0.999 | 0.999 | 0.972 | 0.97 |
best | 1.0 | 1.0 | 0.999 | 0.999 | 0.972 | 0.97 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.995 | 0.994 | 0.941 | 0.934 | 0.807 | 0.813 |
best | 0.997 | 0.996 | 0.983 | 0.978 | 0.914 | 0.906 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | POU {3.1.10} (TFClass) |
TF subfamily | POU3 {3.1.10.3} (TFClass) |
TFClass ID | TFClass: 3.1.10.3.4 |
HGNC | HGNC:9217 |
MGI | MGI:101894 |
EntrezGene (human) | GeneID:5456 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18994 (SSTAR profile) |
UniProt ID (human) | PO3F4_HUMAN |
UniProt ID (mouse) | PO3F4_MOUSE |
UniProt AC (human) | P49335 (TFClass) |
UniProt AC (mouse) | P62515 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | PO3F4.H12CORE.0.SM.B.pcm |
PWM | PO3F4.H12CORE.0.SM.B.pwm |
PFM | PO3F4.H12CORE.0.SM.B.pfm |
Alignment | PO3F4.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | PO3F4.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | PO3F4.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | PO3F4.H12CORE.0.SM.B_meme_format.meme |
Transfac format | PO3F4.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1583.0 | 2822.0 | 2035.0 | 1377.0 |
02 | 429.0 | 5636.0 | 644.0 | 1108.0 |
03 | 242.0 | 108.0 | 137.0 | 7330.0 |
04 | 4365.0 | 3265.0 | 111.0 | 76.0 |
05 | 7792.0 | 11.0 | 10.0 | 4.0 |
06 | 0.0 | 9.0 | 5.0 | 7803.0 |
07 | 17.0 | 10.0 | 66.0 | 7724.0 |
08 | 4940.0 | 77.0 | 0.0 | 2800.0 |
09 | 332.0 | 75.0 | 7402.0 | 8.0 |
10 | 6.0 | 7748.0 | 17.0 | 46.0 |
11 | 7710.0 | 23.0 | 48.0 | 36.0 |
12 | 42.0 | 61.0 | 23.0 | 7691.0 |
13 | 7274.0 | 83.0 | 203.0 | 257.0 |
14 | 4945.75 | 1010.75 | 227.75 | 1632.75 |
15 | 1587.5 | 1547.5 | 1452.5 | 3229.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.203 | 0.361 | 0.26 | 0.176 |
02 | 0.055 | 0.721 | 0.082 | 0.142 |
03 | 0.031 | 0.014 | 0.018 | 0.938 |
04 | 0.558 | 0.418 | 0.014 | 0.01 |
05 | 0.997 | 0.001 | 0.001 | 0.001 |
06 | 0.0 | 0.001 | 0.001 | 0.998 |
07 | 0.002 | 0.001 | 0.008 | 0.988 |
08 | 0.632 | 0.01 | 0.0 | 0.358 |
09 | 0.042 | 0.01 | 0.947 | 0.001 |
10 | 0.001 | 0.991 | 0.002 | 0.006 |
11 | 0.986 | 0.003 | 0.006 | 0.005 |
12 | 0.005 | 0.008 | 0.003 | 0.984 |
13 | 0.931 | 0.011 | 0.026 | 0.033 |
14 | 0.633 | 0.129 | 0.029 | 0.209 |
15 | 0.203 | 0.198 | 0.186 | 0.413 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.21 | 0.367 | 0.04 | -0.35 |
02 | -1.512 | 1.058 | -1.108 | -0.567 |
03 | -2.081 | -2.876 | -2.643 | 1.321 |
04 | 0.803 | 0.513 | -2.849 | -3.219 |
05 | 1.382 | -4.996 | -5.074 | -5.748 |
06 | -6.772 | -5.159 | -5.599 | 1.384 |
07 | -4.622 | -5.074 | -3.356 | 1.373 |
08 | 0.927 | -3.206 | -6.772 | 0.359 |
09 | -1.767 | -3.232 | 1.331 | -5.253 |
10 | -5.47 | 1.377 | -4.622 | -3.703 |
11 | 1.372 | -4.35 | -3.662 | -3.935 |
12 | -3.789 | -3.432 | -4.35 | 1.369 |
13 | 1.313 | -3.133 | -2.255 | -2.021 |
14 | 0.928 | -0.658 | -2.141 | -0.18 |
15 | -0.208 | -0.233 | -0.296 | 0.502 |
P-value | Threshold |
---|---|
0.001 | -1.46569 |
0.0005 | 0.23451 |
0.0001 | 3.84571 |