MotifPO3F3.H12INVIVO.0.P.C
Gene (human)POU3F3
(GeneCards)
Gene synonyms (human)BRN1, OTF8
Gene (mouse)Pou3f3
Gene synonyms (mouse)Brn-1, Brn1, Otf8
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length12
ConsensusbdhATGMAWAWK
GC content30.96%
Information content (bits; total / per base)11.048 / 0.921
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 1 (7) 0.814 0.827 0.739 0.749 0.82 0.834 3.415 3.534 230.77 239.155

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.768 0.718 0.69 0.657 0.617 0.606
best 0.848 0.799 0.754 0.718 0.655 0.646
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPOU {3.1.10} (TFClass)
TF subfamilyPOU3 {3.1.10.3} (TFClass)
TFClass IDTFClass: 3.1.10.3.3
HGNCHGNC:9216
MGIMGI:102564
EntrezGene (human)GeneID:5455
(SSTAR profile)
EntrezGene (mouse)GeneID:18993
(SSTAR profile)
UniProt ID (human)PO3F3_HUMAN
UniProt ID (mouse)PO3F3_MOUSE
UniProt AC (human)P20264
(TFClass)
UniProt AC (mouse)P31361
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01124.0388.0245.0239.0
02204.091.0177.0524.0
03143.0554.084.0215.0
04927.048.02.019.0
056.01.010.0979.0
0639.016.0908.033.0
07350.0551.042.053.0
08827.017.02.0150.0
09401.011.059.0525.0
10913.031.014.038.0
11211.022.039.0724.0
1239.052.0336.0569.0
PFM
ACGT
010.1240.390.2460.24
020.2050.0910.1780.526
030.1440.5560.0840.216
040.9310.0480.0020.019
050.0060.0010.010.983
060.0390.0160.9120.033
070.3510.5530.0420.053
080.830.0170.0020.151
090.4030.0110.0590.527
100.9170.0310.0140.038
110.2120.0220.0390.727
120.0390.0520.3370.571
PWM
ACGT
01-0.690.441-0.016-0.041
02-0.198-0.995-0.3390.74
03-0.550.796-1.073-0.146
041.309-1.618-4.209-2.493
05-3.48-4.522-3.0631.364
06-1.817-2.6491.289-1.977
070.3380.791-1.746-1.522
081.196-2.594-4.209-0.502
090.474-2.981-1.4180.742
101.294-2.036-2.769-1.842
11-0.164-2.358-1.8171.063
12-1.817-1.540.2980.823
Standard thresholds
P-value Threshold
0.001 4.462765
0.0005 5.39167
0.0001 7.285435