| Motif | PO3F3.H12INVITRO.0.P.C |
| Gene (human) | POU3F3 (GeneCards) |
| Gene synonyms (human) | BRN1, OTF8 |
| Gene (mouse) | Pou3f3 |
| Gene synonyms (mouse) | Brn-1, Brn1, Otf8 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | C |
| Motif | PO3F3.H12INVITRO.0.P.C |
| Gene (human) | POU3F3 (GeneCards) |
| Gene synonyms (human) | BRN1, OTF8 |
| Gene (mouse) | Pou3f3 |
| Gene synonyms (mouse) | Brn-1, Brn1, Otf8 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | C |
| Motif length | 10 |
| Consensus | hATGMAWAWK |
| GC content | 27.47% |
| Information content (bits; total / per base) | 10.769 / 1.077 |
| Data sources | ChIP-Seq |
| Aligned words | 1014 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 1 (7) | 0.812 | 0.82 | 0.725 | 0.734 | 0.819 | 0.83 | 3.135 | 3.21 | 217.252 | 231.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.772 | 0.721 | 0.693 | 0.659 | 0.62 | 0.608 |
| best | 0.853 | 0.803 | 0.756 | 0.72 | 0.657 | 0.648 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | POU {3.1.10} (TFClass) |
| TF subfamily | POU3 {3.1.10.3} (TFClass) |
| TFClass ID | TFClass: 3.1.10.3.3 |
| HGNC | HGNC:9216 |
| MGI | MGI:102564 |
| EntrezGene (human) | GeneID:5455 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18993 (SSTAR profile) |
| UniProt ID (human) | PO3F3_HUMAN |
| UniProt ID (mouse) | PO3F3_MOUSE |
| UniProt AC (human) | P20264 (TFClass) |
| UniProt AC (mouse) | P31361 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | PO3F3.H12INVITRO.0.P.C.pcm |
| PWM | PO3F3.H12INVITRO.0.P.C.pwm |
| PFM | PO3F3.H12INVITRO.0.P.C.pfm |
| Alignment | PO3F3.H12INVITRO.0.P.C.words.tsv |
| Threshold to P-value map | PO3F3.H12INVITRO.0.P.C.thr |
| Motif in other formats | |
| JASPAR format | PO3F3.H12INVITRO.0.P.C_jaspar_format.txt |
| MEME format | PO3F3.H12INVITRO.0.P.C_meme_format.meme |
| Transfac format | PO3F3.H12INVITRO.0.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 149.0 | 561.0 | 62.0 | 242.0 |
| 02 | 910.0 | 50.0 | 11.0 | 43.0 |
| 03 | 7.0 | 0.0 | 8.0 | 999.0 |
| 04 | 35.0 | 6.0 | 948.0 | 25.0 |
| 05 | 379.0 | 550.0 | 30.0 | 55.0 |
| 06 | 866.0 | 13.0 | 3.0 | 132.0 |
| 07 | 412.0 | 14.0 | 58.0 | 530.0 |
| 08 | 955.0 | 20.0 | 15.0 | 24.0 |
| 09 | 224.0 | 24.0 | 41.0 | 725.0 |
| 10 | 79.0 | 41.0 | 330.0 | 564.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | 0.553 | 0.061 | 0.239 |
| 02 | 0.897 | 0.049 | 0.011 | 0.042 |
| 03 | 0.007 | 0.0 | 0.008 | 0.985 |
| 04 | 0.035 | 0.006 | 0.935 | 0.025 |
| 05 | 0.374 | 0.542 | 0.03 | 0.054 |
| 06 | 0.854 | 0.013 | 0.003 | 0.13 |
| 07 | 0.406 | 0.014 | 0.057 | 0.523 |
| 08 | 0.942 | 0.02 | 0.015 | 0.024 |
| 09 | 0.221 | 0.024 | 0.04 | 0.715 |
| 10 | 0.078 | 0.04 | 0.325 | 0.556 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.527 | 0.791 | -1.388 | -0.046 |
| 02 | 1.273 | -1.596 | -2.998 | -1.742 |
| 03 | -3.375 | -4.994 | -3.267 | 1.366 |
| 04 | -1.939 | -3.497 | 1.314 | -2.256 |
| 05 | 0.4 | 0.771 | -2.085 | -1.504 |
| 06 | 1.224 | -2.852 | -3.988 | -0.646 |
| 07 | 0.483 | -2.787 | -1.452 | 0.734 |
| 08 | 1.321 | -2.463 | -2.725 | -2.294 |
| 09 | -0.123 | -2.294 | -1.787 | 1.046 |
| 10 | -1.151 | -1.787 | 0.262 | 0.796 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.527935 |
| 0.0005 | 5.44053 |
| 0.0001 | 7.29348 |