Motif | PO3F3.H12CORE.0.P.C |
Gene (human) | POU3F3 (GeneCards) |
Gene synonyms (human) | BRN1, OTF8 |
Gene (mouse) | Pou3f3 |
Gene synonyms (mouse) | Brn-1, Brn1, Otf8 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | PO3F3.H12CORE.0.P.C |
Gene (human) | POU3F3 (GeneCards) |
Gene synonyms (human) | BRN1, OTF8 |
Gene (mouse) | Pou3f3 |
Gene synonyms (mouse) | Brn-1, Brn1, Otf8 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 12 |
Consensus | bdhATGMAWAWK |
GC content | 30.96% |
Information content (bits; total / per base) | 11.048 / 0.921 |
Data sources | ChIP-Seq |
Aligned words | 996 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (7) | 0.814 | 0.827 | 0.739 | 0.749 | 0.82 | 0.834 | 3.415 | 3.534 | 230.77 | 239.155 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.768 | 0.718 | 0.69 | 0.657 | 0.617 | 0.606 |
best | 0.848 | 0.799 | 0.754 | 0.718 | 0.655 | 0.646 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | POU {3.1.10} (TFClass) |
TF subfamily | POU3 {3.1.10.3} (TFClass) |
TFClass ID | TFClass: 3.1.10.3.3 |
HGNC | HGNC:9216 |
MGI | MGI:102564 |
EntrezGene (human) | GeneID:5455 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18993 (SSTAR profile) |
UniProt ID (human) | PO3F3_HUMAN |
UniProt ID (mouse) | PO3F3_MOUSE |
UniProt AC (human) | P20264 (TFClass) |
UniProt AC (mouse) | P31361 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | PO3F3.H12CORE.0.P.C.pcm |
PWM | PO3F3.H12CORE.0.P.C.pwm |
PFM | PO3F3.H12CORE.0.P.C.pfm |
Alignment | PO3F3.H12CORE.0.P.C.words.tsv |
Threshold to P-value map | PO3F3.H12CORE.0.P.C.thr |
Motif in other formats | |
JASPAR format | PO3F3.H12CORE.0.P.C_jaspar_format.txt |
MEME format | PO3F3.H12CORE.0.P.C_meme_format.meme |
Transfac format | PO3F3.H12CORE.0.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 124.0 | 388.0 | 245.0 | 239.0 |
02 | 204.0 | 91.0 | 177.0 | 524.0 |
03 | 143.0 | 554.0 | 84.0 | 215.0 |
04 | 927.0 | 48.0 | 2.0 | 19.0 |
05 | 6.0 | 1.0 | 10.0 | 979.0 |
06 | 39.0 | 16.0 | 908.0 | 33.0 |
07 | 350.0 | 551.0 | 42.0 | 53.0 |
08 | 827.0 | 17.0 | 2.0 | 150.0 |
09 | 401.0 | 11.0 | 59.0 | 525.0 |
10 | 913.0 | 31.0 | 14.0 | 38.0 |
11 | 211.0 | 22.0 | 39.0 | 724.0 |
12 | 39.0 | 52.0 | 336.0 | 569.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.124 | 0.39 | 0.246 | 0.24 |
02 | 0.205 | 0.091 | 0.178 | 0.526 |
03 | 0.144 | 0.556 | 0.084 | 0.216 |
04 | 0.931 | 0.048 | 0.002 | 0.019 |
05 | 0.006 | 0.001 | 0.01 | 0.983 |
06 | 0.039 | 0.016 | 0.912 | 0.033 |
07 | 0.351 | 0.553 | 0.042 | 0.053 |
08 | 0.83 | 0.017 | 0.002 | 0.151 |
09 | 0.403 | 0.011 | 0.059 | 0.527 |
10 | 0.917 | 0.031 | 0.014 | 0.038 |
11 | 0.212 | 0.022 | 0.039 | 0.727 |
12 | 0.039 | 0.052 | 0.337 | 0.571 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.69 | 0.441 | -0.016 | -0.041 |
02 | -0.198 | -0.995 | -0.339 | 0.74 |
03 | -0.55 | 0.796 | -1.073 | -0.146 |
04 | 1.309 | -1.618 | -4.209 | -2.493 |
05 | -3.48 | -4.522 | -3.063 | 1.364 |
06 | -1.817 | -2.649 | 1.289 | -1.977 |
07 | 0.338 | 0.791 | -1.746 | -1.522 |
08 | 1.196 | -2.594 | -4.209 | -0.502 |
09 | 0.474 | -2.981 | -1.418 | 0.742 |
10 | 1.294 | -2.036 | -2.769 | -1.842 |
11 | -0.164 | -2.358 | -1.817 | 1.063 |
12 | -1.817 | -1.54 | 0.298 | 0.823 |
P-value | Threshold |
---|---|
0.001 | 4.462765 |
0.0005 | 5.39167 |
0.0001 | 7.285435 |