Motif | PO2F3.H12CORE.0.PS.A |
Gene (human) | POU2F3 (GeneCards) |
Gene synonyms (human) | OTF11, PLA1 |
Gene (mouse) | Pou2f3 |
Gene synonyms (mouse) | Epoc1, Oct11, Otf-11, Otf11 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif | PO2F3.H12CORE.0.PS.A |
Gene (human) | POU2F3 (GeneCards) |
Gene synonyms (human) | OTF11, PLA1 |
Gene (mouse) | Pou2f3 |
Gene synonyms (mouse) | Epoc1, Oct11, Otf-11, Otf11 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | A |
Motif length | 13 |
Consensus | dbGCAAATTWvnn |
GC content | 35.74% |
Information content (bits; total / per base) | 13.392 / 1.03 |
Data sources | ChIP-Seq + HT-SELEX |
Aligned words | 7441 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 1 (6) | 0.811 | 0.83 | 0.713 | 0.735 | 0.74 | 0.762 | 2.34 | 2.452 | 109.297 | 128.921 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 2 experiments | median | 0.998 | 0.996 | 0.995 | 0.993 | 0.987 | 0.982 |
best | 0.998 | 0.997 | 0.996 | 0.994 | 0.988 | 0.983 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | POU {3.1.10} (TFClass) |
TF subfamily | POU2 {3.1.10.2} (TFClass) |
TFClass ID | TFClass: 3.1.10.2.3 |
HGNC | HGNC:19864 |
MGI | MGI:102565 |
EntrezGene (human) | GeneID:25833 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | PO2F3_HUMAN |
UniProt ID (mouse) | PO2F3_MOUSE |
UniProt AC (human) | Q9UKI9 (TFClass) |
UniProt AC (mouse) | P31362 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 1 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 0 |
PCM | PO2F3.H12CORE.0.PS.A.pcm |
PWM | PO2F3.H12CORE.0.PS.A.pwm |
PFM | PO2F3.H12CORE.0.PS.A.pfm |
Alignment | PO2F3.H12CORE.0.PS.A.words.tsv |
Threshold to P-value map | PO2F3.H12CORE.0.PS.A.thr |
Motif in other formats | |
JASPAR format | PO2F3.H12CORE.0.PS.A_jaspar_format.txt |
MEME format | PO2F3.H12CORE.0.PS.A_meme_format.meme |
Transfac format | PO2F3.H12CORE.0.PS.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 4030.25 | 1094.25 | 1175.25 | 1141.25 |
02 | 1094.5 | 1153.5 | 1180.5 | 4012.5 |
03 | 39.0 | 35.0 | 7291.0 | 76.0 |
04 | 21.0 | 7178.0 | 59.0 | 183.0 |
05 | 4542.0 | 1.0 | 1.0 | 2897.0 |
06 | 7330.0 | 2.0 | 28.0 | 81.0 |
07 | 7441.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 2.0 | 6.0 | 7433.0 |
09 | 26.0 | 336.0 | 736.0 | 6343.0 |
10 | 5056.0 | 752.0 | 92.0 | 1541.0 |
11 | 1384.0 | 1380.0 | 3912.0 | 765.0 |
12 | 871.75 | 2191.75 | 2177.75 | 2199.75 |
13 | 1317.5 | 2303.5 | 1484.5 | 2335.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.542 | 0.147 | 0.158 | 0.153 |
02 | 0.147 | 0.155 | 0.159 | 0.539 |
03 | 0.005 | 0.005 | 0.98 | 0.01 |
04 | 0.003 | 0.965 | 0.008 | 0.025 |
05 | 0.61 | 0.0 | 0.0 | 0.389 |
06 | 0.985 | 0.0 | 0.004 | 0.011 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.001 | 0.999 |
09 | 0.003 | 0.045 | 0.099 | 0.852 |
10 | 0.679 | 0.101 | 0.012 | 0.207 |
11 | 0.186 | 0.185 | 0.526 | 0.103 |
12 | 0.117 | 0.295 | 0.293 | 0.296 |
13 | 0.177 | 0.31 | 0.2 | 0.314 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.772 | -0.53 | -0.459 | -0.488 |
02 | -0.53 | -0.477 | -0.454 | 0.768 |
03 | -3.811 | -3.913 | 1.365 | -3.17 |
04 | -4.384 | 1.349 | -3.415 | -2.308 |
05 | 0.892 | -6.358 | -6.358 | 0.443 |
06 | 1.37 | -6.088 | -4.121 | -3.108 |
07 | 1.385 | -6.728 | -6.728 | -6.728 |
08 | -6.728 | -6.088 | -5.422 | 1.384 |
09 | -4.189 | -1.706 | -0.925 | 1.226 |
10 | 0.999 | -0.904 | -2.984 | -0.188 |
11 | -0.295 | -0.298 | 0.743 | -0.887 |
12 | -0.757 | 0.164 | 0.157 | 0.167 |
13 | -0.344 | 0.213 | -0.225 | 0.227 |
P-value | Threshold |
---|---|
0.001 | 2.77991 |
0.0005 | 4.16071 |
0.0001 | 7.103695 |