MotifPO2F1.H12INVIVO.0.PS.A
Gene (human)POU2F1
(GeneCards)
Gene synonyms (human)OCT1, OTF1
Gene (mouse)Pou2f1
Gene synonyms (mouse)Oct-1, Otf-1, Otf1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensushYATGMAWATd
GC content26.11%
Information content (bits; total / per base)13.766 / 1.251
Data sourcesChIP-Seq + HT-SELEX
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 9 (52) 0.716 0.95 0.603 0.907 0.657 0.95 2.268 4.546 7.139 370.444
Mouse 1 (7) 0.751 0.8 0.673 0.729 0.709 0.751 2.956 3.206 55.276 69.553

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.992 0.988 0.951 0.945 0.834 0.849
best 0.998 0.997 0.993 0.991 0.945 0.943
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPOU {3.1.10} (TFClass)
TF subfamilyPOU2 {3.1.10.2} (TFClass)
TFClass IDTFClass: 3.1.10.2.1
HGNCHGNC:9212
MGIMGI:101898
EntrezGene (human)GeneID:5451
(SSTAR profile)
EntrezGene (mouse)GeneID:18986
(SSTAR profile)
UniProt ID (human)PO2F1_HUMAN
UniProt ID (mouse)PO2F1_MOUSE
UniProt AC (human)P14859
(TFClass)
UniProt AC (mouse)P25425
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 9 human, 1 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
01430.0190.097.0283.0
0299.0195.08.0698.0
03981.010.06.03.0
044.02.01.0993.0
054.01.0990.05.0
06151.0733.010.0106.0
07954.09.00.037.0
08618.03.054.0325.0
09996.00.00.04.0
1023.024.015.0938.0
11184.068.0456.0292.0
PFM
ACGT
010.430.190.0970.283
020.0990.1950.0080.698
030.9810.010.0060.003
040.0040.0020.0010.993
050.0040.0010.990.005
060.1510.7330.010.106
070.9540.0090.00.037
080.6180.0030.0540.325
090.9960.00.00.004
100.0230.0240.0150.938
110.1840.0680.4560.292
PWM
ACGT
010.539-0.272-0.9360.123
02-0.916-0.247-3.2531.022
031.362-3.066-3.484-3.975
04-3.783-4.213-4.5251.374
05-3.783-4.5251.371-3.622
06-0.51.071-3.066-0.849
071.334-3.156-4.982-1.872
080.901-3.975-1.5080.261
091.377-4.982-4.982-3.783
10-2.32-2.281-2.7111.317
11-0.304-1.2840.5980.154
Standard thresholds
P-value Threshold
0.001 3.07346
0.0005 4.347265
0.0001 6.801385