| Motif | PO2F1.H12CORE.0.PS.A |
| Gene (human) | POU2F1 (GeneCards) |
| Gene synonyms (human) | OCT1, OTF1 |
| Gene (mouse) | Pou2f1 |
| Gene synonyms (mouse) | Oct-1, Otf-1, Otf1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | PO2F1.H12CORE.0.PS.A |
| Gene (human) | POU2F1 (GeneCards) |
| Gene synonyms (human) | OCT1, OTF1 |
| Gene (mouse) | Pou2f1 |
| Gene synonyms (mouse) | Oct-1, Otf-1, Otf1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 11 |
| Consensus | hYATGMAWATd |
| GC content | 26.11% |
| Information content (bits; total / per base) | 13.766 / 1.251 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 9 (52) | 0.716 | 0.95 | 0.603 | 0.907 | 0.657 | 0.95 | 2.268 | 4.546 | 7.139 | 370.444 |
| Mouse | 1 (7) | 0.751 | 0.8 | 0.673 | 0.729 | 0.709 | 0.751 | 2.956 | 3.206 | 55.276 | 69.553 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.992 | 0.988 | 0.951 | 0.945 | 0.834 | 0.849 |
| best | 0.998 | 0.997 | 0.993 | 0.991 | 0.945 | 0.943 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | POU {3.1.10} (TFClass) |
| TF subfamily | POU2 {3.1.10.2} (TFClass) |
| TFClass ID | TFClass: 3.1.10.2.1 |
| HGNC | HGNC:9212 |
| MGI | MGI:101898 |
| EntrezGene (human) | GeneID:5451 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18986 (SSTAR profile) |
| UniProt ID (human) | PO2F1_HUMAN |
| UniProt ID (mouse) | PO2F1_MOUSE |
| UniProt AC (human) | P14859 (TFClass) |
| UniProt AC (mouse) | P25425 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 9 human, 1 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | PO2F1.H12CORE.0.PS.A.pcm |
| PWM | PO2F1.H12CORE.0.PS.A.pwm |
| PFM | PO2F1.H12CORE.0.PS.A.pfm |
| Alignment | PO2F1.H12CORE.0.PS.A.words.tsv |
| Threshold to P-value map | PO2F1.H12CORE.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | PO2F1.H12CORE.0.PS.A_jaspar_format.txt |
| MEME format | PO2F1.H12CORE.0.PS.A_meme_format.meme |
| Transfac format | PO2F1.H12CORE.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 430.0 | 190.0 | 97.0 | 283.0 |
| 02 | 99.0 | 195.0 | 8.0 | 698.0 |
| 03 | 981.0 | 10.0 | 6.0 | 3.0 |
| 04 | 4.0 | 2.0 | 1.0 | 993.0 |
| 05 | 4.0 | 1.0 | 990.0 | 5.0 |
| 06 | 151.0 | 733.0 | 10.0 | 106.0 |
| 07 | 954.0 | 9.0 | 0.0 | 37.0 |
| 08 | 618.0 | 3.0 | 54.0 | 325.0 |
| 09 | 996.0 | 0.0 | 0.0 | 4.0 |
| 10 | 23.0 | 24.0 | 15.0 | 938.0 |
| 11 | 184.0 | 68.0 | 456.0 | 292.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.43 | 0.19 | 0.097 | 0.283 |
| 02 | 0.099 | 0.195 | 0.008 | 0.698 |
| 03 | 0.981 | 0.01 | 0.006 | 0.003 |
| 04 | 0.004 | 0.002 | 0.001 | 0.993 |
| 05 | 0.004 | 0.001 | 0.99 | 0.005 |
| 06 | 0.151 | 0.733 | 0.01 | 0.106 |
| 07 | 0.954 | 0.009 | 0.0 | 0.037 |
| 08 | 0.618 | 0.003 | 0.054 | 0.325 |
| 09 | 0.996 | 0.0 | 0.0 | 0.004 |
| 10 | 0.023 | 0.024 | 0.015 | 0.938 |
| 11 | 0.184 | 0.068 | 0.456 | 0.292 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.539 | -0.272 | -0.936 | 0.123 |
| 02 | -0.916 | -0.247 | -3.253 | 1.022 |
| 03 | 1.362 | -3.066 | -3.484 | -3.975 |
| 04 | -3.783 | -4.213 | -4.525 | 1.374 |
| 05 | -3.783 | -4.525 | 1.371 | -3.622 |
| 06 | -0.5 | 1.071 | -3.066 | -0.849 |
| 07 | 1.334 | -3.156 | -4.982 | -1.872 |
| 08 | 0.901 | -3.975 | -1.508 | 0.261 |
| 09 | 1.377 | -4.982 | -4.982 | -3.783 |
| 10 | -2.32 | -2.281 | -2.711 | 1.317 |
| 11 | -0.304 | -1.284 | 0.598 | 0.154 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.07346 |
| 0.0005 | 4.347265 |
| 0.0001 | 6.801385 |