| Motif | PKNX2.H12INVITRO.1.SM.B |
| Gene (human) | PKNOX2 (GeneCards) |
| Gene synonyms (human) | PREP2 |
| Gene (mouse) | Pknox2 |
| Gene synonyms (mouse) | Prep2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | PKNX2.H12INVITRO.1.SM.B |
| Gene (human) | PKNOX2 (GeneCards) |
| Gene synonyms (human) | PREP2 |
| Gene (mouse) | Pknox2 |
| Gene synonyms (mouse) | Prep2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 11 |
| Consensus | nTGACAGvYdn |
| GC content | 52.34% |
| Information content (bits; total / per base) | 11.55 / 1.05 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9614 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.994 | 0.99 | 0.984 | 0.977 | 0.969 | 0.955 |
| best | 0.996 | 0.994 | 0.99 | 0.984 | 0.98 | 0.971 | |
| Methyl HT-SELEX, 2 experiments | median | 0.988 | 0.982 | 0.978 | 0.966 | 0.948 | 0.932 |
| best | 0.991 | 0.988 | 0.979 | 0.969 | 0.962 | 0.943 | |
| Non-Methyl HT-SELEX, 2 experiments | median | 0.996 | 0.993 | 0.989 | 0.984 | 0.978 | 0.968 |
| best | 0.996 | 0.994 | 0.99 | 0.984 | 0.98 | 0.971 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PKNOX {3.1.4.5} (TFClass) |
| TFClass ID | TFClass: 3.1.4.5.2 |
| HGNC | HGNC:16714 |
| MGI | MGI:2445415 |
| EntrezGene (human) | GeneID:63876 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:208076 (SSTAR profile) |
| UniProt ID (human) | PKNX2_HUMAN |
| UniProt ID (mouse) | PKNX2_MOUSE |
| UniProt AC (human) | Q96KN3 (TFClass) |
| UniProt AC (mouse) | Q8BG99 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 2 |
| PCM | PKNX2.H12INVITRO.1.SM.B.pcm |
| PWM | PKNX2.H12INVITRO.1.SM.B.pwm |
| PFM | PKNX2.H12INVITRO.1.SM.B.pfm |
| Alignment | PKNX2.H12INVITRO.1.SM.B.words.tsv |
| Threshold to P-value map | PKNX2.H12INVITRO.1.SM.B.thr |
| Motif in other formats | |
| JASPAR format | PKNX2.H12INVITRO.1.SM.B_jaspar_format.txt |
| MEME format | PKNX2.H12INVITRO.1.SM.B_meme_format.meme |
| Transfac format | PKNX2.H12INVITRO.1.SM.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2125.75 | 2411.75 | 2138.75 | 2937.75 |
| 02 | 243.0 | 359.0 | 43.0 | 8969.0 |
| 03 | 0.0 | 0.0 | 9614.0 | 0.0 |
| 04 | 9598.0 | 0.0 | 16.0 | 0.0 |
| 05 | 0.0 | 9614.0 | 0.0 | 0.0 |
| 06 | 9328.0 | 0.0 | 286.0 | 0.0 |
| 07 | 282.0 | 629.0 | 7848.0 | 855.0 |
| 08 | 1280.0 | 3790.0 | 4013.0 | 531.0 |
| 09 | 461.0 | 2694.0 | 963.0 | 5496.0 |
| 10 | 1578.0 | 1141.0 | 5236.0 | 1659.0 |
| 11 | 1853.5 | 1818.5 | 2734.5 | 3207.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.221 | 0.251 | 0.222 | 0.306 |
| 02 | 0.025 | 0.037 | 0.004 | 0.933 |
| 03 | 0.0 | 0.0 | 1.0 | 0.0 |
| 04 | 0.998 | 0.0 | 0.002 | 0.0 |
| 05 | 0.0 | 1.0 | 0.0 | 0.0 |
| 06 | 0.97 | 0.0 | 0.03 | 0.0 |
| 07 | 0.029 | 0.065 | 0.816 | 0.089 |
| 08 | 0.133 | 0.394 | 0.417 | 0.055 |
| 09 | 0.048 | 0.28 | 0.1 | 0.572 |
| 10 | 0.164 | 0.119 | 0.545 | 0.173 |
| 11 | 0.193 | 0.189 | 0.284 | 0.334 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.123 | 0.003 | -0.117 | 0.201 |
| 02 | -2.283 | -1.896 | -3.972 | 1.316 |
| 03 | -6.956 | -6.956 | 1.386 | -6.956 |
| 04 | 1.384 | -6.956 | -4.879 | -6.956 |
| 05 | -6.956 | 1.386 | -6.956 | -6.956 |
| 06 | 1.355 | -6.956 | -2.122 | -6.956 |
| 07 | -2.136 | -1.338 | 1.183 | -1.032 |
| 08 | -0.629 | 0.455 | 0.512 | -1.507 |
| 09 | -1.647 | 0.114 | -0.913 | 0.827 |
| 10 | -0.42 | -0.744 | 0.778 | -0.37 |
| 11 | -0.26 | -0.279 | 0.129 | 0.288 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.091945 |
| 0.0005 | 5.361025 |
| 0.0001 | 7.578415 |