MotifPKNX2.H12CORE.0.SM.B
Gene (human)PKNOX2
(GeneCards)
Gene synonyms (human)PREP2
Gene (mouse)Pknox2
Gene synonyms (mouse)Prep2
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusnndTGACAGSTGWYd
GC content50.18%
Information content (bits; total / per base)16.444 / 1.096
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words1519

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.995 0.993 0.984 0.978 0.964 0.951
best 0.997 0.996 0.991 0.987 0.977 0.969
Methyl HT-SELEX, 2 experiments median 0.992 0.987 0.978 0.969 0.941 0.927
best 0.994 0.992 0.978 0.971 0.957 0.941
Non-Methyl HT-SELEX, 2 experiments median 0.997 0.995 0.99 0.986 0.974 0.965
best 0.997 0.996 0.991 0.987 0.977 0.969
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPKNOX {3.1.4.5} (TFClass)
TFClass IDTFClass: 3.1.4.5.2
HGNCHGNC:16714
MGIMGI:2445415
EntrezGene (human)GeneID:63876
(SSTAR profile)
EntrezGene (mouse)GeneID:208076
(SSTAR profile)
UniProt ID (human)PKNX2_HUMAN
UniProt ID (mouse)PKNX2_MOUSE
UniProt AC (human)Q96KN3
(TFClass)
UniProt AC (mouse)Q8BG99
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01424.5275.5487.5331.5
02439.75192.75457.75428.75
03367.0106.0373.0673.0
041.030.04.01484.0
050.00.01519.00.0
061516.00.02.01.0
070.01519.00.00.0
081519.00.00.00.0
090.017.01467.035.0
1036.0826.0625.032.0
119.088.017.01405.0
12124.046.01232.0117.0
13262.0129.0215.0913.0
1499.251050.25166.25203.25
15703.25187.25401.25227.25
PFM
ACGT
010.2790.1810.3210.218
020.2890.1270.3010.282
030.2420.070.2460.443
040.0010.020.0030.977
050.00.01.00.0
060.9980.00.0010.001
070.01.00.00.0
081.00.00.00.0
090.00.0110.9660.023
100.0240.5440.4110.021
110.0060.0580.0110.925
120.0820.030.8110.077
130.1720.0850.1420.601
140.0650.6910.1090.134
150.4630.1230.2640.15
PWM
ACGT
010.111-0.3190.249-0.135
020.146-0.6730.1860.121
03-0.034-1.264-0.0180.57
04-4.904-2.484-4.1811.359
05-5.339-5.3391.383-5.339
061.381-5.339-4.601-4.904
07-5.3391.383-5.339-5.339
081.383-5.339-5.339-5.339
09-5.339-3.0091.348-2.338
10-2.3110.7740.496-2.423
11-3.562-1.446-3.0091.305
12-1.109-2.0771.174-1.167
13-0.369-1.07-0.5650.874
14-1.3281.014-0.82-0.621
150.614-0.7020.055-0.51
Standard thresholds
P-value Threshold
0.001 1.01391
0.0005 2.57116
0.0001 5.74581