Motif | PKNX2.H12CORE.0.SM.B |
Gene (human) | PKNOX2 (GeneCards) |
Gene synonyms (human) | PREP2 |
Gene (mouse) | Pknox2 |
Gene synonyms (mouse) | Prep2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | PKNX2.H12CORE.0.SM.B |
Gene (human) | PKNOX2 (GeneCards) |
Gene synonyms (human) | PREP2 |
Gene (mouse) | Pknox2 |
Gene synonyms (mouse) | Prep2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 15 |
Consensus | nndTGACAGSTGWYd |
GC content | 50.18% |
Information content (bits; total / per base) | 16.444 / 1.096 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 1519 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.995 | 0.993 | 0.984 | 0.978 | 0.964 | 0.951 |
best | 0.997 | 0.996 | 0.991 | 0.987 | 0.977 | 0.969 | |
Methyl HT-SELEX, 2 experiments | median | 0.992 | 0.987 | 0.978 | 0.969 | 0.941 | 0.927 |
best | 0.994 | 0.992 | 0.978 | 0.971 | 0.957 | 0.941 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.997 | 0.995 | 0.99 | 0.986 | 0.974 | 0.965 |
best | 0.997 | 0.996 | 0.991 | 0.987 | 0.977 | 0.969 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | TALE-type HD {3.1.4} (TFClass) |
TF subfamily | PKNOX {3.1.4.5} (TFClass) |
TFClass ID | TFClass: 3.1.4.5.2 |
HGNC | HGNC:16714 |
MGI | MGI:2445415 |
EntrezGene (human) | GeneID:63876 (SSTAR profile) |
EntrezGene (mouse) | GeneID:208076 (SSTAR profile) |
UniProt ID (human) | PKNX2_HUMAN |
UniProt ID (mouse) | PKNX2_MOUSE |
UniProt AC (human) | Q96KN3 (TFClass) |
UniProt AC (mouse) | Q8BG99 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | PKNX2.H12CORE.0.SM.B.pcm |
PWM | PKNX2.H12CORE.0.SM.B.pwm |
PFM | PKNX2.H12CORE.0.SM.B.pfm |
Alignment | PKNX2.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | PKNX2.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | PKNX2.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | PKNX2.H12CORE.0.SM.B_meme_format.meme |
Transfac format | PKNX2.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 424.5 | 275.5 | 487.5 | 331.5 |
02 | 439.75 | 192.75 | 457.75 | 428.75 |
03 | 367.0 | 106.0 | 373.0 | 673.0 |
04 | 1.0 | 30.0 | 4.0 | 1484.0 |
05 | 0.0 | 0.0 | 1519.0 | 0.0 |
06 | 1516.0 | 0.0 | 2.0 | 1.0 |
07 | 0.0 | 1519.0 | 0.0 | 0.0 |
08 | 1519.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 17.0 | 1467.0 | 35.0 |
10 | 36.0 | 826.0 | 625.0 | 32.0 |
11 | 9.0 | 88.0 | 17.0 | 1405.0 |
12 | 124.0 | 46.0 | 1232.0 | 117.0 |
13 | 262.0 | 129.0 | 215.0 | 913.0 |
14 | 99.25 | 1050.25 | 166.25 | 203.25 |
15 | 703.25 | 187.25 | 401.25 | 227.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.279 | 0.181 | 0.321 | 0.218 |
02 | 0.289 | 0.127 | 0.301 | 0.282 |
03 | 0.242 | 0.07 | 0.246 | 0.443 |
04 | 0.001 | 0.02 | 0.003 | 0.977 |
05 | 0.0 | 0.0 | 1.0 | 0.0 |
06 | 0.998 | 0.0 | 0.001 | 0.001 |
07 | 0.0 | 1.0 | 0.0 | 0.0 |
08 | 1.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.011 | 0.966 | 0.023 |
10 | 0.024 | 0.544 | 0.411 | 0.021 |
11 | 0.006 | 0.058 | 0.011 | 0.925 |
12 | 0.082 | 0.03 | 0.811 | 0.077 |
13 | 0.172 | 0.085 | 0.142 | 0.601 |
14 | 0.065 | 0.691 | 0.109 | 0.134 |
15 | 0.463 | 0.123 | 0.264 | 0.15 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.111 | -0.319 | 0.249 | -0.135 |
02 | 0.146 | -0.673 | 0.186 | 0.121 |
03 | -0.034 | -1.264 | -0.018 | 0.57 |
04 | -4.904 | -2.484 | -4.181 | 1.359 |
05 | -5.339 | -5.339 | 1.383 | -5.339 |
06 | 1.381 | -5.339 | -4.601 | -4.904 |
07 | -5.339 | 1.383 | -5.339 | -5.339 |
08 | 1.383 | -5.339 | -5.339 | -5.339 |
09 | -5.339 | -3.009 | 1.348 | -2.338 |
10 | -2.311 | 0.774 | 0.496 | -2.423 |
11 | -3.562 | -1.446 | -3.009 | 1.305 |
12 | -1.109 | -2.077 | 1.174 | -1.167 |
13 | -0.369 | -1.07 | -0.565 | 0.874 |
14 | -1.328 | 1.014 | -0.82 | -0.621 |
15 | 0.614 | -0.702 | 0.055 | -0.51 |
P-value | Threshold |
---|---|
0.001 | 1.01391 |
0.0005 | 2.57116 |
0.0001 | 5.74581 |