MotifPBX3.H12INVIVO.1.P.B
Gene (human)PBX3
(GeneCards)
Gene synonyms (human)
Gene (mouse)Pbx3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length10
ConsensusWGAbKGRCdK
GC content54.06%
Information content (bits; total / per base)9.859 / 0.986
Data sourcesChIP-Seq
Aligned words991

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 5 (35) 0.808 0.901 0.704 0.825 0.788 0.89 2.818 3.583 234.056 465.42
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.3
HGNCHGNC:8634
MGIMGI:97496
EntrezGene (human)GeneID:5090
(SSTAR profile)
EntrezGene (mouse)GeneID:18516
(SSTAR profile)
UniProt ID (human)PBX3_HUMAN
UniProt ID (mouse)PBX3_MOUSE
UniProt AC (human)P40426
(TFClass)
UniProt AC (mouse)O35317
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 5 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01130.0109.0119.0633.0
0240.027.0908.016.0
03963.09.014.05.0
0441.0239.0296.0415.0
0566.077.0154.0694.0
0617.01.0970.03.0
07599.03.0386.03.0
0829.0878.016.068.0
09527.059.0300.0105.0
1068.0105.0687.0131.0
PFM
ACGT
010.1310.110.120.639
020.040.0270.9160.016
030.9720.0090.0140.005
040.0410.2410.2990.419
050.0670.0780.1550.7
060.0170.0010.9790.003
070.6040.0030.390.003
080.0290.8860.0160.069
090.5320.060.3030.106
100.0690.1060.6930.132
PWM
ACGT
01-0.639-0.812-0.7260.934
02-1.788-2.1621.294-2.644
031.352-3.147-2.764-3.614
04-1.765-0.0360.1770.513
05-1.304-1.153-0.4711.026
06-2.59-4.5171.36-3.967
070.879-3.9670.441-3.967
08-2.0941.26-2.644-1.275
090.751-1.4130.19-0.849
10-1.275-0.8491.015-0.631
Standard thresholds
P-value Threshold
0.001 4.778465
0.0005 5.703635
0.0001 7.423285