| Motif | PBX3.H12INVIVO.1.P.B |
| Gene (human) | PBX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pbx3 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | B |
| Motif | PBX3.H12INVIVO.1.P.B |
| Gene (human) | PBX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pbx3 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | B |
| Motif length | 10 |
| Consensus | WGAbKGRCdK |
| GC content | 54.06% |
| Information content (bits; total / per base) | 9.859 / 0.986 |
| Data sources | ChIP-Seq |
| Aligned words | 991 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (35) | 0.808 | 0.901 | 0.704 | 0.825 | 0.788 | 0.89 | 2.818 | 3.583 | 234.056 | 465.42 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.3 |
| HGNC | HGNC:8634 |
| MGI | MGI:97496 |
| EntrezGene (human) | GeneID:5090 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18516 (SSTAR profile) |
| UniProt ID (human) | PBX3_HUMAN |
| UniProt ID (mouse) | PBX3_MOUSE |
| UniProt AC (human) | P40426 (TFClass) |
| UniProt AC (mouse) | O35317 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX3.H12INVIVO.1.P.B.pcm |
| PWM | PBX3.H12INVIVO.1.P.B.pwm |
| PFM | PBX3.H12INVIVO.1.P.B.pfm |
| Alignment | PBX3.H12INVIVO.1.P.B.words.tsv |
| Threshold to P-value map | PBX3.H12INVIVO.1.P.B.thr |
| Motif in other formats | |
| JASPAR format | PBX3.H12INVIVO.1.P.B_jaspar_format.txt |
| MEME format | PBX3.H12INVIVO.1.P.B_meme_format.meme |
| Transfac format | PBX3.H12INVIVO.1.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 130.0 | 109.0 | 119.0 | 633.0 |
| 02 | 40.0 | 27.0 | 908.0 | 16.0 |
| 03 | 963.0 | 9.0 | 14.0 | 5.0 |
| 04 | 41.0 | 239.0 | 296.0 | 415.0 |
| 05 | 66.0 | 77.0 | 154.0 | 694.0 |
| 06 | 17.0 | 1.0 | 970.0 | 3.0 |
| 07 | 599.0 | 3.0 | 386.0 | 3.0 |
| 08 | 29.0 | 878.0 | 16.0 | 68.0 |
| 09 | 527.0 | 59.0 | 300.0 | 105.0 |
| 10 | 68.0 | 105.0 | 687.0 | 131.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.131 | 0.11 | 0.12 | 0.639 |
| 02 | 0.04 | 0.027 | 0.916 | 0.016 |
| 03 | 0.972 | 0.009 | 0.014 | 0.005 |
| 04 | 0.041 | 0.241 | 0.299 | 0.419 |
| 05 | 0.067 | 0.078 | 0.155 | 0.7 |
| 06 | 0.017 | 0.001 | 0.979 | 0.003 |
| 07 | 0.604 | 0.003 | 0.39 | 0.003 |
| 08 | 0.029 | 0.886 | 0.016 | 0.069 |
| 09 | 0.532 | 0.06 | 0.303 | 0.106 |
| 10 | 0.069 | 0.106 | 0.693 | 0.132 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.639 | -0.812 | -0.726 | 0.934 |
| 02 | -1.788 | -2.162 | 1.294 | -2.644 |
| 03 | 1.352 | -3.147 | -2.764 | -3.614 |
| 04 | -1.765 | -0.036 | 0.177 | 0.513 |
| 05 | -1.304 | -1.153 | -0.471 | 1.026 |
| 06 | -2.59 | -4.517 | 1.36 | -3.967 |
| 07 | 0.879 | -3.967 | 0.441 | -3.967 |
| 08 | -2.094 | 1.26 | -2.644 | -1.275 |
| 09 | 0.751 | -1.413 | 0.19 | -0.849 |
| 10 | -1.275 | -0.849 | 1.015 | -0.631 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.778465 |
| 0.0005 | 5.703635 |
| 0.0001 | 7.423285 |