| Motif | PBX3.H12INVITRO.0.P.D |
| Gene (human) | PBX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pbx3 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PBX3.H12INVITRO.0.P.D |
| Gene (human) | PBX3 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Pbx3 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | bbYSAKTGGCdS |
| GC content | 51.73% |
| Information content (bits; total / per base) | 11.045 / 0.92 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (35) | 0.835 | 0.928 | 0.733 | 0.835 | 0.795 | 0.908 | 2.812 | 3.445 | 140.699 | 286.538 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.3 |
| HGNC | HGNC:8634 |
| MGI | MGI:97496 |
| EntrezGene (human) | GeneID:5090 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18516 (SSTAR profile) |
| UniProt ID (human) | PBX3_HUMAN |
| UniProt ID (mouse) | PBX3_MOUSE |
| UniProt AC (human) | P40426 (TFClass) |
| UniProt AC (mouse) | O35317 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX3.H12INVITRO.0.P.D.pcm |
| PWM | PBX3.H12INVITRO.0.P.D.pwm |
| PFM | PBX3.H12INVITRO.0.P.D.pfm |
| Alignment | PBX3.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | PBX3.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX3.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | PBX3.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | PBX3.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 108.0 | 260.0 | 287.0 | 345.0 |
| 02 | 114.0 | 455.0 | 226.0 | 205.0 |
| 03 | 39.0 | 201.0 | 39.0 | 721.0 |
| 04 | 15.0 | 192.0 | 744.0 | 49.0 |
| 05 | 988.0 | 2.0 | 6.0 | 4.0 |
| 06 | 11.0 | 99.0 | 157.0 | 733.0 |
| 07 | 7.0 | 2.0 | 33.0 | 958.0 |
| 08 | 3.0 | 0.0 | 992.0 | 5.0 |
| 09 | 366.0 | 0.0 | 633.0 | 1.0 |
| 10 | 50.0 | 783.0 | 12.0 | 155.0 |
| 11 | 367.0 | 152.0 | 166.0 | 315.0 |
| 12 | 115.0 | 126.0 | 641.0 | 118.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.108 | 0.26 | 0.287 | 0.345 |
| 02 | 0.114 | 0.455 | 0.226 | 0.205 |
| 03 | 0.039 | 0.201 | 0.039 | 0.721 |
| 04 | 0.015 | 0.192 | 0.744 | 0.049 |
| 05 | 0.988 | 0.002 | 0.006 | 0.004 |
| 06 | 0.011 | 0.099 | 0.157 | 0.733 |
| 07 | 0.007 | 0.002 | 0.033 | 0.958 |
| 08 | 0.003 | 0.0 | 0.992 | 0.005 |
| 09 | 0.366 | 0.0 | 0.633 | 0.001 |
| 10 | 0.05 | 0.783 | 0.012 | 0.155 |
| 11 | 0.367 | 0.152 | 0.166 | 0.315 |
| 12 | 0.115 | 0.126 | 0.641 | 0.118 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.83 | 0.039 | 0.137 | 0.32 |
| 02 | -0.777 | 0.596 | -0.1 | -0.197 |
| 03 | -1.821 | -0.216 | -1.821 | 1.055 |
| 04 | -2.711 | -0.262 | 1.086 | -1.602 |
| 05 | 1.369 | -4.213 | -3.484 | -3.783 |
| 06 | -2.985 | -0.916 | -0.461 | 1.071 |
| 07 | -3.362 | -4.213 | -1.981 | 1.338 |
| 08 | -3.975 | -4.982 | 1.373 | -3.622 |
| 09 | 0.379 | -4.982 | 0.925 | -4.525 |
| 10 | -1.582 | 1.137 | -2.909 | -0.474 |
| 11 | 0.382 | -0.493 | -0.406 | 0.23 |
| 12 | -0.769 | -0.678 | 0.937 | -0.743 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.49706 |
| 0.0005 | 5.49433 |
| 0.0001 | 7.40637 |