| Motif | PBX2.H12RSNP.2.P.C |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | C |
| Motif | PBX2.H12RSNP.2.P.C |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | C |
| Motif length | 8 |
| Consensus | bWGACAGv |
| GC content | 56.78% |
| Information content (bits; total / per base) | 10.749 / 1.344 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.68 | 0.694 | 0.505 | 0.531 | 0.696 | 0.725 | 1.846 | 1.985 | 94.244 | 138.161 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.602 | 0.02 | 0.663 | 0.359 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12RSNP.2.P.C.pcm |
| PWM | PBX2.H12RSNP.2.P.C.pwm |
| PFM | PBX2.H12RSNP.2.P.C.pfm |
| Alignment | PBX2.H12RSNP.2.P.C.words.tsv |
| Threshold to P-value map | PBX2.H12RSNP.2.P.C.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12RSNP.2.P.C_jaspar_format.txt |
| MEME format | PBX2.H12RSNP.2.P.C_meme_format.meme |
| Transfac format | PBX2.H12RSNP.2.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 80.0 | 325.0 | 514.0 | 81.0 |
| 02 | 262.0 | 21.0 | 72.0 | 645.0 |
| 03 | 3.0 | 1.0 | 994.0 | 2.0 |
| 04 | 986.0 | 3.0 | 8.0 | 3.0 |
| 05 | 1.0 | 992.0 | 5.0 | 2.0 |
| 06 | 974.0 | 2.0 | 9.0 | 15.0 |
| 07 | 10.0 | 1.0 | 987.0 | 2.0 |
| 08 | 347.0 | 239.0 | 369.0 | 45.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.08 | 0.325 | 0.514 | 0.081 |
| 02 | 0.262 | 0.021 | 0.072 | 0.645 |
| 03 | 0.003 | 0.001 | 0.994 | 0.002 |
| 04 | 0.986 | 0.003 | 0.008 | 0.003 |
| 05 | 0.001 | 0.992 | 0.005 | 0.002 |
| 06 | 0.974 | 0.002 | 0.009 | 0.015 |
| 07 | 0.01 | 0.001 | 0.987 | 0.002 |
| 08 | 0.347 | 0.239 | 0.369 | 0.045 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.125 | 0.261 | 0.717 | -1.113 |
| 02 | 0.047 | -2.405 | -1.228 | 0.944 |
| 03 | -3.975 | -4.525 | 1.375 | -4.213 |
| 04 | 1.367 | -3.975 | -3.253 | -3.975 |
| 05 | -4.525 | 1.373 | -3.622 | -4.213 |
| 06 | 1.355 | -4.213 | -3.156 | -2.711 |
| 07 | -3.066 | -4.525 | 1.368 | -4.213 |
| 08 | 0.326 | -0.045 | 0.387 | -1.684 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.94246 |
| 0.0005 | 5.636425 |
| 0.0001 | 7.962495 |