MotifPBX2.H12INVIVO.2.P.C
Gene (human)PBX2
(GeneCards)
Gene synonyms (human)G17
Gene (mouse)Pbx2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length9
ConsensusRbWGACAGv
GC content52.7%
Information content (bits; total / per base)9.653 / 1.073
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.723 0.75 0.587 0.626 0.741 0.761 2.169 2.458 181.678 245.041

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.571 0.008 0.63 0.308
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.2
HGNCHGNC:8633
MGIMGI:1341793
EntrezGene (human)GeneID:5089
(SSTAR profile)
EntrezGene (mouse)GeneID:18515
(SSTAR profile)
UniProt ID (human)PBX2_HUMAN
UniProt ID (mouse)PBX2_MOUSE
UniProt AC (human)P40425
(TFClass)
UniProt AC (mouse)O35984
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01615.054.0229.0102.0
02122.0249.0428.0201.0
03164.027.060.0749.0
0410.010.0978.02.0
05917.05.061.017.0
066.0949.032.013.0
07902.02.034.062.0
0827.08.0925.040.0
09247.0291.0401.061.0
PFM
ACGT
010.6150.0540.2290.102
020.1220.2490.4280.201
030.1640.0270.060.749
040.010.010.9780.002
050.9170.0050.0610.017
060.0060.9490.0320.013
070.9020.0020.0340.062
080.0270.0080.9250.04
090.2470.2910.4010.061
PWM
ACGT
010.896-1.508-0.087-0.887
02-0.71-0.0040.535-0.216
03-0.418-2.171-1.4061.093
04-3.066-3.0661.359-4.213
051.295-3.622-1.39-2.598
06-3.4841.329-2.01-2.839
071.278-4.213-1.952-1.374
08-2.171-3.2531.303-1.797
09-0.0120.1510.47-1.39
Standard thresholds
P-value Threshold
0.001 4.79592
0.0005 5.66742
0.0001 7.40699