| Motif | PBX2.H12INVIVO.1.P.C |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | C |
| Motif | PBX2.H12INVIVO.1.P.C |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | C |
| Motif length | 11 |
| Consensus | bbYSATTGGCh |
| GC content | 48.98% |
| Information content (bits; total / per base) | 11.079 / 1.007 |
| Data sources | ChIP-Seq |
| Aligned words | 1002 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.864 | 0.932 | 0.751 | 0.844 | 0.815 | 0.897 | 2.772 | 3.291 | 237.523 | 310.292 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.384 | 0.004 | 0.031 | 0.026 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12INVIVO.1.P.C.pcm |
| PWM | PBX2.H12INVIVO.1.P.C.pwm |
| PFM | PBX2.H12INVIVO.1.P.C.pfm |
| Alignment | PBX2.H12INVIVO.1.P.C.words.tsv |
| Threshold to P-value map | PBX2.H12INVIVO.1.P.C.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12INVIVO.1.P.C_jaspar_format.txt |
| MEME format | PBX2.H12INVIVO.1.P.C_meme_format.meme |
| Transfac format | PBX2.H12INVIVO.1.P.C_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 109.0 | 244.0 | 276.0 | 373.0 |
| 02 | 115.0 | 475.0 | 199.0 | 213.0 |
| 03 | 24.0 | 190.0 | 32.0 | 756.0 |
| 04 | 10.0 | 180.0 | 750.0 | 62.0 |
| 05 | 988.0 | 1.0 | 11.0 | 2.0 |
| 06 | 5.0 | 68.0 | 141.0 | 788.0 |
| 07 | 3.0 | 0.0 | 26.0 | 973.0 |
| 08 | 4.0 | 2.0 | 993.0 | 3.0 |
| 09 | 339.0 | 0.0 | 662.0 | 1.0 |
| 10 | 57.0 | 823.0 | 21.0 | 101.0 |
| 11 | 388.0 | 186.0 | 119.0 | 309.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.109 | 0.244 | 0.275 | 0.372 |
| 02 | 0.115 | 0.474 | 0.199 | 0.213 |
| 03 | 0.024 | 0.19 | 0.032 | 0.754 |
| 04 | 0.01 | 0.18 | 0.749 | 0.062 |
| 05 | 0.986 | 0.001 | 0.011 | 0.002 |
| 06 | 0.005 | 0.068 | 0.141 | 0.786 |
| 07 | 0.003 | 0.0 | 0.026 | 0.971 |
| 08 | 0.004 | 0.002 | 0.991 | 0.003 |
| 09 | 0.338 | 0.0 | 0.661 | 0.001 |
| 10 | 0.057 | 0.821 | 0.021 | 0.101 |
| 11 | 0.387 | 0.186 | 0.119 | 0.308 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.823 | -0.026 | 0.096 | 0.396 |
| 02 | -0.77 | 0.637 | -0.228 | -0.161 |
| 03 | -2.283 | -0.274 | -2.012 | 1.1 |
| 04 | -3.068 | -0.328 | 1.092 | -1.376 |
| 05 | 1.367 | -4.527 | -2.987 | -4.215 |
| 06 | -3.624 | -1.286 | -0.569 | 1.141 |
| 07 | -3.977 | -4.984 | -2.208 | 1.352 |
| 08 | -3.785 | -4.215 | 1.372 | -3.977 |
| 09 | 0.301 | -4.984 | 0.968 | -4.527 |
| 10 | -1.457 | 1.185 | -2.407 | -0.898 |
| 11 | 0.435 | -0.295 | -0.737 | 0.209 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.451625 |
| 0.0005 | 5.477145 |
| 0.0001 | 7.44676 |