| Motif | PBX2.H12INVIVO.0.P.B |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | PBX2.H12INVIVO.0.P.B |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 11 |
| Consensus | WGAbKGACRKv |
| GC content | 53.26% |
| Information content (bits; total / per base) | 11.248 / 1.023 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.892 | 0.908 | 0.811 | 0.844 | 0.882 | 0.901 | 3.648 | 4.103 | 405.337 | 512.149 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.542 | 0.008 | 0.678 | 0.487 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12INVIVO.0.P.B.pcm |
| PWM | PBX2.H12INVIVO.0.P.B.pwm |
| PFM | PBX2.H12INVIVO.0.P.B.pfm |
| Alignment | PBX2.H12INVIVO.0.P.B.words.tsv |
| Threshold to P-value map | PBX2.H12INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12INVIVO.0.P.B_jaspar_format.txt |
| MEME format | PBX2.H12INVIVO.0.P.B_meme_format.meme |
| Transfac format | PBX2.H12INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.0 | 76.0 | 66.0 | 753.0 |
| 02 | 10.0 | 22.0 | 960.0 | 8.0 |
| 03 | 982.0 | 4.0 | 11.0 | 3.0 |
| 04 | 14.0 | 193.0 | 338.0 | 455.0 |
| 05 | 51.0 | 52.0 | 152.0 | 745.0 |
| 06 | 46.0 | 3.0 | 924.0 | 27.0 |
| 07 | 720.0 | 0.0 | 279.0 | 1.0 |
| 08 | 8.0 | 842.0 | 2.0 | 148.0 |
| 09 | 588.0 | 16.0 | 288.0 | 108.0 |
| 10 | 61.0 | 77.0 | 755.0 | 107.0 |
| 11 | 106.0 | 411.0 | 388.0 | 95.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.105 | 0.076 | 0.066 | 0.753 |
| 02 | 0.01 | 0.022 | 0.96 | 0.008 |
| 03 | 0.982 | 0.004 | 0.011 | 0.003 |
| 04 | 0.014 | 0.193 | 0.338 | 0.455 |
| 05 | 0.051 | 0.052 | 0.152 | 0.745 |
| 06 | 0.046 | 0.003 | 0.924 | 0.027 |
| 07 | 0.72 | 0.0 | 0.279 | 0.001 |
| 08 | 0.008 | 0.842 | 0.002 | 0.148 |
| 09 | 0.588 | 0.016 | 0.288 | 0.108 |
| 10 | 0.061 | 0.077 | 0.755 | 0.107 |
| 11 | 0.106 | 0.411 | 0.388 | 0.095 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.858 | -1.175 | -1.313 | 1.098 |
| 02 | -3.066 | -2.362 | 1.34 | -3.253 |
| 03 | 1.363 | -3.783 | -2.985 | -3.975 |
| 04 | -2.773 | -0.257 | 0.3 | 0.596 |
| 05 | -1.563 | -1.544 | -0.493 | 1.087 |
| 06 | -1.663 | -3.975 | 1.302 | -2.171 |
| 07 | 1.053 | -4.982 | 0.109 | -4.525 |
| 08 | -3.253 | 1.209 | -4.213 | -0.52 |
| 09 | 0.851 | -2.653 | 0.141 | -0.83 |
| 10 | -1.39 | -1.162 | 1.101 | -0.84 |
| 11 | -0.849 | 0.494 | 0.437 | -0.956 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.42321 |
| 0.0005 | 5.386285 |
| 0.0001 | 7.291755 |