| Motif | PBX2.H12INVITRO.2.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | D |
| Motif | PBX2.H12INVITRO.2.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | D |
| Motif length | 9 |
| Consensus | RbWGACAGv |
| GC content | 52.7% |
| Information content (bits; total / per base) | 9.653 / 1.073 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.723 | 0.75 | 0.587 | 0.626 | 0.741 | 0.761 | 2.169 | 2.458 | 181.678 | 245.041 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.571 | 0.008 | 0.63 | 0.308 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12INVITRO.2.P.D.pcm |
| PWM | PBX2.H12INVITRO.2.P.D.pwm |
| PFM | PBX2.H12INVITRO.2.P.D.pfm |
| Alignment | PBX2.H12INVITRO.2.P.D.words.tsv |
| Threshold to P-value map | PBX2.H12INVITRO.2.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12INVITRO.2.P.D_jaspar_format.txt |
| MEME format | PBX2.H12INVITRO.2.P.D_meme_format.meme |
| Transfac format | PBX2.H12INVITRO.2.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 615.0 | 54.0 | 229.0 | 102.0 |
| 02 | 122.0 | 249.0 | 428.0 | 201.0 |
| 03 | 164.0 | 27.0 | 60.0 | 749.0 |
| 04 | 10.0 | 10.0 | 978.0 | 2.0 |
| 05 | 917.0 | 5.0 | 61.0 | 17.0 |
| 06 | 6.0 | 949.0 | 32.0 | 13.0 |
| 07 | 902.0 | 2.0 | 34.0 | 62.0 |
| 08 | 27.0 | 8.0 | 925.0 | 40.0 |
| 09 | 247.0 | 291.0 | 401.0 | 61.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.615 | 0.054 | 0.229 | 0.102 |
| 02 | 0.122 | 0.249 | 0.428 | 0.201 |
| 03 | 0.164 | 0.027 | 0.06 | 0.749 |
| 04 | 0.01 | 0.01 | 0.978 | 0.002 |
| 05 | 0.917 | 0.005 | 0.061 | 0.017 |
| 06 | 0.006 | 0.949 | 0.032 | 0.013 |
| 07 | 0.902 | 0.002 | 0.034 | 0.062 |
| 08 | 0.027 | 0.008 | 0.925 | 0.04 |
| 09 | 0.247 | 0.291 | 0.401 | 0.061 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.896 | -1.508 | -0.087 | -0.887 |
| 02 | -0.71 | -0.004 | 0.535 | -0.216 |
| 03 | -0.418 | -2.171 | -1.406 | 1.093 |
| 04 | -3.066 | -3.066 | 1.359 | -4.213 |
| 05 | 1.295 | -3.622 | -1.39 | -2.598 |
| 06 | -3.484 | 1.329 | -2.01 | -2.839 |
| 07 | 1.278 | -4.213 | -1.952 | -1.374 |
| 08 | -2.171 | -3.253 | 1.303 | -1.797 |
| 09 | -0.012 | 0.151 | 0.47 | -1.39 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.79592 |
| 0.0005 | 5.66742 |
| 0.0001 | 7.40699 |