| Motif | PBX2.H12INVITRO.1.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | PBX2.H12INVITRO.1.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 9 |
| Consensus | bTSATTGGC |
| GC content | 49.94% |
| Information content (bits; total / per base) | 10.91 / 1.212 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.866 | 0.931 | 0.752 | 0.839 | 0.814 | 0.897 | 2.632 | 3.106 | 225.066 | 282.638 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.493 | 0.005 | -0.064 | 0.103 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12INVITRO.1.P.D.pcm |
| PWM | PBX2.H12INVITRO.1.P.D.pwm |
| PFM | PBX2.H12INVITRO.1.P.D.pfm |
| Alignment | PBX2.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | PBX2.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | PBX2.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | PBX2.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 114.0 | 459.0 | 216.0 | 211.0 |
| 02 | 21.0 | 177.0 | 27.0 | 775.0 |
| 03 | 16.0 | 177.0 | 742.0 | 65.0 |
| 04 | 988.0 | 1.0 | 8.0 | 3.0 |
| 05 | 2.0 | 71.0 | 138.0 | 789.0 |
| 06 | 3.0 | 2.0 | 13.0 | 982.0 |
| 07 | 7.0 | 0.0 | 991.0 | 2.0 |
| 08 | 349.0 | 0.0 | 648.0 | 3.0 |
| 09 | 49.0 | 812.0 | 13.0 | 126.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.114 | 0.459 | 0.216 | 0.211 |
| 02 | 0.021 | 0.177 | 0.027 | 0.775 |
| 03 | 0.016 | 0.177 | 0.742 | 0.065 |
| 04 | 0.988 | 0.001 | 0.008 | 0.003 |
| 05 | 0.002 | 0.071 | 0.138 | 0.789 |
| 06 | 0.003 | 0.002 | 0.013 | 0.982 |
| 07 | 0.007 | 0.0 | 0.991 | 0.002 |
| 08 | 0.349 | 0.0 | 0.648 | 0.003 |
| 09 | 0.049 | 0.812 | 0.013 | 0.126 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.777 | 0.604 | -0.145 | -0.168 |
| 02 | -2.405 | -0.342 | -2.171 | 1.127 |
| 03 | -2.653 | -0.342 | 1.083 | -1.328 |
| 04 | 1.369 | -4.525 | -3.253 | -3.975 |
| 05 | -4.213 | -1.242 | -0.589 | 1.145 |
| 06 | -3.975 | -4.213 | -2.839 | 1.363 |
| 07 | -3.362 | -4.982 | 1.372 | -4.213 |
| 08 | 0.332 | -4.982 | 0.948 | -3.975 |
| 09 | -1.602 | 1.173 | -2.839 | -0.678 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.50253 |
| 0.0005 | 5.53499 |
| 0.0001 | 7.410225 |