MotifPBX2.H12INVITRO.1.P.D
Gene (human)PBX2
(GeneCards)
Gene synonyms (human)G17
Gene (mouse)Pbx2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length9
ConsensusbTSATTGGC
GC content49.94%
Information content (bits; total / per base)10.91 / 1.212
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.866 0.931 0.752 0.839 0.814 0.897 2.632 3.106 225.066 282.638

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.493 0.005 -0.064 0.103
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.2
HGNCHGNC:8633
MGIMGI:1341793
EntrezGene (human)GeneID:5089
(SSTAR profile)
EntrezGene (mouse)GeneID:18515
(SSTAR profile)
UniProt ID (human)PBX2_HUMAN
UniProt ID (mouse)PBX2_MOUSE
UniProt AC (human)P40425
(TFClass)
UniProt AC (mouse)O35984
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01114.0459.0216.0211.0
0221.0177.027.0775.0
0316.0177.0742.065.0
04988.01.08.03.0
052.071.0138.0789.0
063.02.013.0982.0
077.00.0991.02.0
08349.00.0648.03.0
0949.0812.013.0126.0
PFM
ACGT
010.1140.4590.2160.211
020.0210.1770.0270.775
030.0160.1770.7420.065
040.9880.0010.0080.003
050.0020.0710.1380.789
060.0030.0020.0130.982
070.0070.00.9910.002
080.3490.00.6480.003
090.0490.8120.0130.126
PWM
ACGT
01-0.7770.604-0.145-0.168
02-2.405-0.342-2.1711.127
03-2.653-0.3421.083-1.328
041.369-4.525-3.253-3.975
05-4.213-1.242-0.5891.145
06-3.975-4.213-2.8391.363
07-3.362-4.9821.372-4.213
080.332-4.9820.948-3.975
09-1.6021.173-2.839-0.678
Standard thresholds
P-value Threshold
0.001 4.50253
0.0005 5.53499
0.0001 7.410225