| Motif | PBX2.H12INVITRO.0.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | PBX2.H12INVITRO.0.P.D |
| Gene (human) | PBX2 (GeneCards) |
| Gene synonyms (human) | G17 |
| Gene (mouse) | Pbx2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | WGAbKGACRKv |
| GC content | 50.63% |
| Information content (bits; total / per base) | 9.654 / 0.878 |
| Data sources | ChIP-Seq |
| Aligned words | 957 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (21) | 0.888 | 0.903 | 0.809 | 0.84 | 0.872 | 0.891 | 3.633 | 4.079 | 382.921 | 494.481 |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.618 | 0.012 | 0.768 | 0.59 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.2 |
| HGNC | HGNC:8633 |
| MGI | MGI:1341793 |
| EntrezGene (human) | GeneID:5089 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
| UniProt ID (human) | PBX2_HUMAN |
| UniProt ID (mouse) | PBX2_MOUSE |
| UniProt AC (human) | P40425 (TFClass) |
| UniProt AC (mouse) | O35984 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX2.H12INVITRO.0.P.D.pcm |
| PWM | PBX2.H12INVITRO.0.P.D.pwm |
| PFM | PBX2.H12INVITRO.0.P.D.pfm |
| Alignment | PBX2.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | PBX2.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX2.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | PBX2.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | PBX2.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 118.0 | 63.0 | 70.0 | 706.0 |
| 02 | 29.0 | 48.0 | 871.0 | 9.0 |
| 03 | 894.0 | 20.0 | 31.0 | 12.0 |
| 04 | 33.0 | 178.0 | 331.0 | 415.0 |
| 05 | 85.0 | 44.0 | 105.0 | 723.0 |
| 06 | 56.0 | 7.0 | 834.0 | 60.0 |
| 07 | 720.0 | 13.0 | 217.0 | 7.0 |
| 08 | 11.0 | 747.0 | 11.0 | 188.0 |
| 09 | 555.0 | 31.0 | 267.0 | 104.0 |
| 10 | 108.0 | 92.0 | 640.0 | 117.0 |
| 11 | 140.0 | 368.0 | 342.0 | 107.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.123 | 0.066 | 0.073 | 0.738 |
| 02 | 0.03 | 0.05 | 0.91 | 0.009 |
| 03 | 0.934 | 0.021 | 0.032 | 0.013 |
| 04 | 0.034 | 0.186 | 0.346 | 0.434 |
| 05 | 0.089 | 0.046 | 0.11 | 0.755 |
| 06 | 0.059 | 0.007 | 0.871 | 0.063 |
| 07 | 0.752 | 0.014 | 0.227 | 0.007 |
| 08 | 0.011 | 0.781 | 0.011 | 0.196 |
| 09 | 0.58 | 0.032 | 0.279 | 0.109 |
| 10 | 0.113 | 0.096 | 0.669 | 0.122 |
| 11 | 0.146 | 0.385 | 0.357 | 0.112 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.7 | -1.315 | -1.212 | 1.077 |
| 02 | -2.06 | -1.578 | 1.287 | -3.113 |
| 03 | 1.313 | -2.407 | -1.997 | -2.866 |
| 04 | -1.937 | -0.293 | 0.323 | 0.548 |
| 05 | -1.022 | -1.662 | -0.814 | 1.101 |
| 06 | -1.429 | -3.32 | 1.244 | -1.362 |
| 07 | 1.097 | -2.796 | -0.097 | -3.32 |
| 08 | -2.942 | 1.134 | -2.942 | -0.239 |
| 09 | 0.837 | -1.997 | 0.109 | -0.824 |
| 10 | -0.787 | -0.944 | 0.979 | -0.708 |
| 11 | -0.531 | 0.428 | 0.355 | -0.796 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.78308 |
| 0.0005 | 5.583815 |
| 0.0001 | 7.225015 |