MotifPBX2.H12INVITRO.0.P.D
Gene (human)PBX2
(GeneCards)
Gene synonyms (human)G17
Gene (mouse)Pbx2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusWGAbKGACRKv
GC content50.63%
Information content (bits; total / per base)9.654 / 0.878
Data sourcesChIP-Seq
Aligned words957

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (21) 0.888 0.903 0.809 0.84 0.872 0.891 3.633 4.079 382.921 494.481

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.618 0.012 0.768 0.59
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.2
HGNCHGNC:8633
MGIMGI:1341793
EntrezGene (human)GeneID:5089
(SSTAR profile)
EntrezGene (mouse)GeneID:18515
(SSTAR profile)
UniProt ID (human)PBX2_HUMAN
UniProt ID (mouse)PBX2_MOUSE
UniProt AC (human)P40425
(TFClass)
UniProt AC (mouse)O35984
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01118.063.070.0706.0
0229.048.0871.09.0
03894.020.031.012.0
0433.0178.0331.0415.0
0585.044.0105.0723.0
0656.07.0834.060.0
07720.013.0217.07.0
0811.0747.011.0188.0
09555.031.0267.0104.0
10108.092.0640.0117.0
11140.0368.0342.0107.0
PFM
ACGT
010.1230.0660.0730.738
020.030.050.910.009
030.9340.0210.0320.013
040.0340.1860.3460.434
050.0890.0460.110.755
060.0590.0070.8710.063
070.7520.0140.2270.007
080.0110.7810.0110.196
090.580.0320.2790.109
100.1130.0960.6690.122
110.1460.3850.3570.112
PWM
ACGT
01-0.7-1.315-1.2121.077
02-2.06-1.5781.287-3.113
031.313-2.407-1.997-2.866
04-1.937-0.2930.3230.548
05-1.022-1.662-0.8141.101
06-1.429-3.321.244-1.362
071.097-2.796-0.097-3.32
08-2.9421.134-2.942-0.239
090.837-1.9970.109-0.824
10-0.787-0.9440.979-0.708
11-0.5310.4280.355-0.796
Standard thresholds
P-value Threshold
0.001 4.78308
0.0005 5.583815
0.0001 7.225015