Motif | PBX2.H12CORE.2.P.C |
Gene (human) | PBX2 (GeneCards) |
Gene synonyms (human) | G17 |
Gene (mouse) | Pbx2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 2 |
Quality | C |
Motif | PBX2.H12CORE.2.P.C |
Gene (human) | PBX2 (GeneCards) |
Gene synonyms (human) | G17 |
Gene (mouse) | Pbx2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 2 |
Quality | C |
Motif length | 9 |
Consensus | RbWGACAGv |
GC content | 52.7% |
Information content (bits; total / per base) | 9.653 / 1.073 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (21) | 0.723 | 0.75 | 0.587 | 0.626 | 0.741 | 0.761 | 2.169 | 2.458 | 181.678 | 245.041 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.571 | 0.008 | 0.63 | 0.308 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | TALE-type HD {3.1.4} (TFClass) |
TF subfamily | PBX {3.1.4.4} (TFClass) |
TFClass ID | TFClass: 3.1.4.4.2 |
HGNC | HGNC:8633 |
MGI | MGI:1341793 |
EntrezGene (human) | GeneID:5089 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
UniProt ID (human) | PBX2_HUMAN |
UniProt ID (mouse) | PBX2_MOUSE |
UniProt AC (human) | P40425 (TFClass) |
UniProt AC (mouse) | O35984 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | PBX2.H12CORE.2.P.C.pcm |
PWM | PBX2.H12CORE.2.P.C.pwm |
PFM | PBX2.H12CORE.2.P.C.pfm |
Alignment | PBX2.H12CORE.2.P.C.words.tsv |
Threshold to P-value map | PBX2.H12CORE.2.P.C.thr |
Motif in other formats | |
JASPAR format | PBX2.H12CORE.2.P.C_jaspar_format.txt |
MEME format | PBX2.H12CORE.2.P.C_meme_format.meme |
Transfac format | PBX2.H12CORE.2.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 615.0 | 54.0 | 229.0 | 102.0 |
02 | 122.0 | 249.0 | 428.0 | 201.0 |
03 | 164.0 | 27.0 | 60.0 | 749.0 |
04 | 10.0 | 10.0 | 978.0 | 2.0 |
05 | 917.0 | 5.0 | 61.0 | 17.0 |
06 | 6.0 | 949.0 | 32.0 | 13.0 |
07 | 902.0 | 2.0 | 34.0 | 62.0 |
08 | 27.0 | 8.0 | 925.0 | 40.0 |
09 | 247.0 | 291.0 | 401.0 | 61.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.615 | 0.054 | 0.229 | 0.102 |
02 | 0.122 | 0.249 | 0.428 | 0.201 |
03 | 0.164 | 0.027 | 0.06 | 0.749 |
04 | 0.01 | 0.01 | 0.978 | 0.002 |
05 | 0.917 | 0.005 | 0.061 | 0.017 |
06 | 0.006 | 0.949 | 0.032 | 0.013 |
07 | 0.902 | 0.002 | 0.034 | 0.062 |
08 | 0.027 | 0.008 | 0.925 | 0.04 |
09 | 0.247 | 0.291 | 0.401 | 0.061 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.896 | -1.508 | -0.087 | -0.887 |
02 | -0.71 | -0.004 | 0.535 | -0.216 |
03 | -0.418 | -2.171 | -1.406 | 1.093 |
04 | -3.066 | -3.066 | 1.359 | -4.213 |
05 | 1.295 | -3.622 | -1.39 | -2.598 |
06 | -3.484 | 1.329 | -2.01 | -2.839 |
07 | 1.278 | -4.213 | -1.952 | -1.374 |
08 | -2.171 | -3.253 | 1.303 | -1.797 |
09 | -0.012 | 0.151 | 0.47 | -1.39 |
P-value | Threshold |
---|---|
0.001 | 4.79592 |
0.0005 | 5.66742 |
0.0001 | 7.40699 |