Motif | PBX2.H12CORE.1.P.C |
Gene (human) | PBX2 (GeneCards) |
Gene synonyms (human) | G17 |
Gene (mouse) | Pbx2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif | PBX2.H12CORE.1.P.C |
Gene (human) | PBX2 (GeneCards) |
Gene synonyms (human) | G17 |
Gene (mouse) | Pbx2 |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | C |
Motif length | 9 |
Consensus | bTSATTGGC |
GC content | 49.94% |
Information content (bits; total / per base) | 10.91 / 1.212 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 3 (21) | 0.866 | 0.931 | 0.752 | 0.839 | 0.814 | 0.897 | 2.632 | 3.106 | 225.066 | 282.638 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.493 | 0.005 | -0.064 | 0.103 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | TALE-type HD {3.1.4} (TFClass) |
TF subfamily | PBX {3.1.4.4} (TFClass) |
TFClass ID | TFClass: 3.1.4.4.2 |
HGNC | HGNC:8633 |
MGI | MGI:1341793 |
EntrezGene (human) | GeneID:5089 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18515 (SSTAR profile) |
UniProt ID (human) | PBX2_HUMAN |
UniProt ID (mouse) | PBX2_MOUSE |
UniProt AC (human) | P40425 (TFClass) |
UniProt AC (mouse) | O35984 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 3 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | PBX2.H12CORE.1.P.C.pcm |
PWM | PBX2.H12CORE.1.P.C.pwm |
PFM | PBX2.H12CORE.1.P.C.pfm |
Alignment | PBX2.H12CORE.1.P.C.words.tsv |
Threshold to P-value map | PBX2.H12CORE.1.P.C.thr |
Motif in other formats | |
JASPAR format | PBX2.H12CORE.1.P.C_jaspar_format.txt |
MEME format | PBX2.H12CORE.1.P.C_meme_format.meme |
Transfac format | PBX2.H12CORE.1.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 114.0 | 459.0 | 216.0 | 211.0 |
02 | 21.0 | 177.0 | 27.0 | 775.0 |
03 | 16.0 | 177.0 | 742.0 | 65.0 |
04 | 988.0 | 1.0 | 8.0 | 3.0 |
05 | 2.0 | 71.0 | 138.0 | 789.0 |
06 | 3.0 | 2.0 | 13.0 | 982.0 |
07 | 7.0 | 0.0 | 991.0 | 2.0 |
08 | 349.0 | 0.0 | 648.0 | 3.0 |
09 | 49.0 | 812.0 | 13.0 | 126.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.114 | 0.459 | 0.216 | 0.211 |
02 | 0.021 | 0.177 | 0.027 | 0.775 |
03 | 0.016 | 0.177 | 0.742 | 0.065 |
04 | 0.988 | 0.001 | 0.008 | 0.003 |
05 | 0.002 | 0.071 | 0.138 | 0.789 |
06 | 0.003 | 0.002 | 0.013 | 0.982 |
07 | 0.007 | 0.0 | 0.991 | 0.002 |
08 | 0.349 | 0.0 | 0.648 | 0.003 |
09 | 0.049 | 0.812 | 0.013 | 0.126 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.777 | 0.604 | -0.145 | -0.168 |
02 | -2.405 | -0.342 | -2.171 | 1.127 |
03 | -2.653 | -0.342 | 1.083 | -1.328 |
04 | 1.369 | -4.525 | -3.253 | -3.975 |
05 | -4.213 | -1.242 | -0.589 | 1.145 |
06 | -3.975 | -4.213 | -2.839 | 1.363 |
07 | -3.362 | -4.982 | 1.372 | -4.213 |
08 | 0.332 | -4.982 | 0.948 | -3.975 |
09 | -1.602 | 1.173 | -2.839 | -0.678 |
P-value | Threshold |
---|---|
0.001 | 4.50253 |
0.0005 | 5.53499 |
0.0001 | 7.410225 |