MotifPBX1.H12INVIVO.1.P.B
Gene (human)PBX1
(GeneCards)
Gene synonyms (human)PRL
Gene (mouse)Pbx1
Gene synonyms (mouse)Pbx-1
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length10
ConsensusbbTGAYTGRY
GC content47.55%
Information content (bits; total / per base)9.766 / 0.977
Data sourcesChIP-Seq
Aligned words1033

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.709 0.899 0.562 0.796 0.611 0.838 1.626 2.803 46.959 141.18
Mouse 12 (79) 0.82 0.9 0.697 0.81 0.76 0.852 2.37 2.968 122.357 237.004
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.1
HGNCHGNC:8632
MGIMGI:97495
EntrezGene (human)GeneID:5087
(SSTAR profile)
EntrezGene (mouse)GeneID:18514
(SSTAR profile)
UniProt ID (human)PBX1_HUMAN
UniProt ID (mouse)PBX1_MOUSE
UniProt AC (human)P40424
(TFClass)
UniProt AC (mouse)P41778
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 12 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01115.0231.0289.0398.0
02132.0423.0256.0222.0
0359.0106.039.0829.0
0412.0147.0836.038.0
051020.07.04.02.0
0612.0145.0128.0748.0
0737.010.063.0923.0
0823.01.0959.050.0
09476.02.0554.01.0
1038.0694.018.0283.0
PFM
ACGT
010.1110.2240.280.385
020.1280.4090.2480.215
030.0570.1030.0380.803
040.0120.1420.8090.037
050.9870.0070.0040.002
060.0120.140.1240.724
070.0360.010.0610.894
080.0220.0010.9280.048
090.4610.0020.5360.001
100.0370.6720.0170.274
PWM
ACGT
01-0.801-0.1110.1120.43
02-0.6650.491-0.009-0.15
03-1.454-0.881-1.8541.162
04-2.941-0.5581.17-1.878
051.369-3.393-3.814-4.243
06-2.941-0.572-0.6951.059
07-1.904-3.098-1.391.269
08-2.352-4.5541.307-1.614
090.608-4.2430.76-4.554
10-1.8780.984-2.5780.091
Standard thresholds
P-value Threshold
0.001 4.814695
0.0005 5.686015
0.0001 7.32812