| Motif | PBX1.H12INVIVO.0.P.B |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | PBX1.H12INVIVO.0.P.B |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 12 |
| Consensus | WGAYKGACRRbh |
| GC content | 49.36% |
| Information content (bits; total / per base) | 10.638 / 0.886 |
| Data sources | ChIP-Seq |
| Aligned words | 996 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (13) | 0.724 | 0.901 | 0.604 | 0.832 | 0.668 | 0.864 | 2.053 | 3.326 | 63.495 | 222.886 |
| Mouse | 12 (79) | 0.837 | 0.909 | 0.731 | 0.839 | 0.811 | 0.889 | 2.913 | 3.834 | 211.921 | 358.824 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.1 |
| HGNC | HGNC:8632 |
| MGI | MGI:97495 |
| EntrezGene (human) | GeneID:5087 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18514 (SSTAR profile) |
| UniProt ID (human) | PBX1_HUMAN |
| UniProt ID (mouse) | PBX1_MOUSE |
| UniProt AC (human) | P40424 (TFClass) |
| UniProt AC (mouse) | P41778 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 12 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX1.H12INVIVO.0.P.B.pcm |
| PWM | PBX1.H12INVIVO.0.P.B.pwm |
| PFM | PBX1.H12INVIVO.0.P.B.pfm |
| Alignment | PBX1.H12INVIVO.0.P.B.words.tsv |
| Threshold to P-value map | PBX1.H12INVIVO.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | PBX1.H12INVIVO.0.P.B_jaspar_format.txt |
| MEME format | PBX1.H12INVIVO.0.P.B_meme_format.meme |
| Transfac format | PBX1.H12INVIVO.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 53.0 | 96.0 | 705.0 |
| 02 | 18.0 | 20.0 | 956.0 | 2.0 |
| 03 | 984.0 | 3.0 | 3.0 | 6.0 |
| 04 | 39.0 | 216.0 | 187.0 | 554.0 |
| 05 | 69.0 | 21.0 | 128.0 | 778.0 |
| 06 | 19.0 | 11.0 | 855.0 | 111.0 |
| 07 | 699.0 | 6.0 | 288.0 | 3.0 |
| 08 | 4.0 | 745.0 | 3.0 | 244.0 |
| 09 | 544.0 | 8.0 | 293.0 | 151.0 |
| 10 | 111.0 | 64.0 | 715.0 | 106.0 |
| 11 | 127.0 | 384.0 | 350.0 | 135.0 |
| 12 | 211.0 | 369.0 | 126.0 | 290.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.143 | 0.053 | 0.096 | 0.708 |
| 02 | 0.018 | 0.02 | 0.96 | 0.002 |
| 03 | 0.988 | 0.003 | 0.003 | 0.006 |
| 04 | 0.039 | 0.217 | 0.188 | 0.556 |
| 05 | 0.069 | 0.021 | 0.129 | 0.781 |
| 06 | 0.019 | 0.011 | 0.858 | 0.111 |
| 07 | 0.702 | 0.006 | 0.289 | 0.003 |
| 08 | 0.004 | 0.748 | 0.003 | 0.245 |
| 09 | 0.546 | 0.008 | 0.294 | 0.152 |
| 10 | 0.111 | 0.064 | 0.718 | 0.106 |
| 11 | 0.128 | 0.386 | 0.351 | 0.136 |
| 12 | 0.212 | 0.37 | 0.127 | 0.291 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.556 | -1.522 | -0.942 | 1.036 |
| 02 | -2.542 | -2.446 | 1.34 | -4.209 |
| 03 | 1.369 | -3.971 | -3.971 | -3.48 |
| 04 | -1.817 | -0.141 | -0.284 | 0.796 |
| 05 | -1.266 | -2.401 | -0.659 | 1.135 |
| 06 | -2.493 | -2.981 | 1.229 | -0.799 |
| 07 | 1.028 | -3.48 | 0.145 | -3.971 |
| 08 | -3.779 | 1.091 | -3.971 | -0.02 |
| 09 | 0.778 | -3.25 | 0.162 | -0.496 |
| 10 | -0.799 | -1.339 | 1.05 | -0.845 |
| 11 | -0.667 | 0.431 | 0.338 | -0.606 |
| 12 | -0.164 | 0.391 | -0.674 | 0.151 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.624415 |
| 0.0005 | 5.542265 |
| 0.0001 | 7.34333 |