MotifPBX1.H12INVIVO.0.P.B
Gene (human)PBX1
(GeneCards)
Gene synonyms (human)PRL
Gene (mouse)Pbx1
Gene synonyms (mouse)Pbx-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusWGAYKGACRRbh
GC content49.36%
Information content (bits; total / per base)10.638 / 0.886
Data sourcesChIP-Seq
Aligned words996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.724 0.901 0.604 0.832 0.668 0.864 2.053 3.326 63.495 222.886
Mouse 12 (79) 0.837 0.909 0.731 0.839 0.811 0.889 2.913 3.834 211.921 358.824
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyTALE-type HD {3.1.4} (TFClass)
TF subfamilyPBX {3.1.4.4} (TFClass)
TFClass IDTFClass: 3.1.4.4.1
HGNCHGNC:8632
MGIMGI:97495
EntrezGene (human)GeneID:5087
(SSTAR profile)
EntrezGene (mouse)GeneID:18514
(SSTAR profile)
UniProt ID (human)PBX1_HUMAN
UniProt ID (mouse)PBX1_MOUSE
UniProt AC (human)P40424
(TFClass)
UniProt AC (mouse)P41778
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 12 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01142.053.096.0705.0
0218.020.0956.02.0
03984.03.03.06.0
0439.0216.0187.0554.0
0569.021.0128.0778.0
0619.011.0855.0111.0
07699.06.0288.03.0
084.0745.03.0244.0
09544.08.0293.0151.0
10111.064.0715.0106.0
11127.0384.0350.0135.0
12211.0369.0126.0290.0
PFM
ACGT
010.1430.0530.0960.708
020.0180.020.960.002
030.9880.0030.0030.006
040.0390.2170.1880.556
050.0690.0210.1290.781
060.0190.0110.8580.111
070.7020.0060.2890.003
080.0040.7480.0030.245
090.5460.0080.2940.152
100.1110.0640.7180.106
110.1280.3860.3510.136
120.2120.370.1270.291
PWM
ACGT
01-0.556-1.522-0.9421.036
02-2.542-2.4461.34-4.209
031.369-3.971-3.971-3.48
04-1.817-0.141-0.2840.796
05-1.266-2.401-0.6591.135
06-2.493-2.9811.229-0.799
071.028-3.480.145-3.971
08-3.7791.091-3.971-0.02
090.778-3.250.162-0.496
10-0.799-1.3391.05-0.845
11-0.6670.4310.338-0.606
12-0.1640.391-0.6740.151
Standard thresholds
P-value Threshold
0.001 4.624415
0.0005 5.542265
0.0001 7.34333