| Motif | PBX1.H12INVITRO.2.P.D |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | D |
| Motif | PBX1.H12INVITRO.2.P.D |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | D |
| Motif length | 10 |
| Consensus | dnTGACAKnh |
| GC content | 48.87% |
| Information content (bits; total / per base) | 8.907 / 0.891 |
| Data sources | ChIP-Seq |
| Aligned words | 1018 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (13) | 0.685 | 0.785 | 0.53 | 0.675 | 0.665 | 0.711 | 1.712 | 2.079 | 44.921 | 121.131 |
| Mouse | 12 (79) | 0.758 | 0.827 | 0.62 | 0.708 | 0.732 | 0.8 | 2.137 | 2.493 | 138.0 | 233.638 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.1 |
| HGNC | HGNC:8632 |
| MGI | MGI:97495 |
| EntrezGene (human) | GeneID:5087 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18514 (SSTAR profile) |
| UniProt ID (human) | PBX1_HUMAN |
| UniProt ID (mouse) | PBX1_MOUSE |
| UniProt AC (human) | P40424 (TFClass) |
| UniProt AC (mouse) | P41778 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 12 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX1.H12INVITRO.2.P.D.pcm |
| PWM | PBX1.H12INVITRO.2.P.D.pwm |
| PFM | PBX1.H12INVITRO.2.P.D.pfm |
| Alignment | PBX1.H12INVITRO.2.P.D.words.tsv |
| Threshold to P-value map | PBX1.H12INVITRO.2.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX1.H12INVITRO.2.P.D_jaspar_format.txt |
| MEME format | PBX1.H12INVITRO.2.P.D_meme_format.meme |
| Transfac format | PBX1.H12INVITRO.2.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 570.0 | 108.0 | 216.0 | 124.0 |
| 02 | 191.0 | 314.0 | 210.0 | 303.0 |
| 03 | 45.0 | 15.0 | 39.0 | 919.0 |
| 04 | 4.0 | 20.0 | 984.0 | 10.0 |
| 05 | 862.0 | 15.0 | 138.0 | 3.0 |
| 06 | 15.0 | 982.0 | 10.0 | 11.0 |
| 07 | 902.0 | 2.0 | 38.0 | 76.0 |
| 08 | 88.0 | 57.0 | 765.0 | 108.0 |
| 09 | 226.0 | 331.0 | 327.0 | 134.0 |
| 10 | 210.0 | 274.0 | 130.0 | 404.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.56 | 0.106 | 0.212 | 0.122 |
| 02 | 0.188 | 0.308 | 0.206 | 0.298 |
| 03 | 0.044 | 0.015 | 0.038 | 0.903 |
| 04 | 0.004 | 0.02 | 0.967 | 0.01 |
| 05 | 0.847 | 0.015 | 0.136 | 0.003 |
| 06 | 0.015 | 0.965 | 0.01 | 0.011 |
| 07 | 0.886 | 0.002 | 0.037 | 0.075 |
| 08 | 0.086 | 0.056 | 0.751 | 0.106 |
| 09 | 0.222 | 0.325 | 0.321 | 0.132 |
| 10 | 0.206 | 0.269 | 0.128 | 0.397 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.803 | -0.848 | -0.163 | -0.712 |
| 02 | -0.285 | 0.209 | -0.191 | 0.173 |
| 03 | -1.702 | -2.729 | -1.839 | 1.279 |
| 04 | -3.8 | -2.467 | 1.347 | -3.084 |
| 05 | 1.215 | -2.729 | -0.606 | -3.992 |
| 06 | -2.729 | 1.345 | -3.084 | -3.002 |
| 07 | 1.26 | -4.229 | -1.864 | -1.193 |
| 08 | -1.049 | -1.473 | 1.096 | -0.848 |
| 09 | -0.118 | 0.261 | 0.249 | -0.635 |
| 10 | -0.191 | 0.073 | -0.665 | 0.46 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.96513 |
| 0.0005 | 5.768985 |
| 0.0001 | 7.33122 |