| Motif | PBX1.H12INVITRO.1.P.D |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | PBX1.H12INVITRO.1.P.D |
| Gene (human) | PBX1 (GeneCards) |
| Gene synonyms (human) | PRL |
| Gene (mouse) | Pbx1 |
| Gene synonyms (mouse) | Pbx-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 10 |
| Consensus | bbTGAYTGRY |
| GC content | 47.55% |
| Information content (bits; total / per base) | 9.766 / 0.977 |
| Data sources | ChIP-Seq |
| Aligned words | 1033 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (13) | 0.709 | 0.899 | 0.562 | 0.796 | 0.611 | 0.838 | 1.626 | 2.803 | 46.959 | 141.18 |
| Mouse | 12 (79) | 0.82 | 0.9 | 0.697 | 0.81 | 0.76 | 0.852 | 2.37 | 2.968 | 122.357 | 237.004 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | PBX {3.1.4.4} (TFClass) |
| TFClass ID | TFClass: 3.1.4.4.1 |
| HGNC | HGNC:8632 |
| MGI | MGI:97495 |
| EntrezGene (human) | GeneID:5087 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:18514 (SSTAR profile) |
| UniProt ID (human) | PBX1_HUMAN |
| UniProt ID (mouse) | PBX1_MOUSE |
| UniProt AC (human) | P40424 (TFClass) |
| UniProt AC (mouse) | P41778 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 12 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | PBX1.H12INVITRO.1.P.D.pcm |
| PWM | PBX1.H12INVITRO.1.P.D.pwm |
| PFM | PBX1.H12INVITRO.1.P.D.pfm |
| Alignment | PBX1.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | PBX1.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | PBX1.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | PBX1.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | PBX1.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 115.0 | 231.0 | 289.0 | 398.0 |
| 02 | 132.0 | 423.0 | 256.0 | 222.0 |
| 03 | 59.0 | 106.0 | 39.0 | 829.0 |
| 04 | 12.0 | 147.0 | 836.0 | 38.0 |
| 05 | 1020.0 | 7.0 | 4.0 | 2.0 |
| 06 | 12.0 | 145.0 | 128.0 | 748.0 |
| 07 | 37.0 | 10.0 | 63.0 | 923.0 |
| 08 | 23.0 | 1.0 | 959.0 | 50.0 |
| 09 | 476.0 | 2.0 | 554.0 | 1.0 |
| 10 | 38.0 | 694.0 | 18.0 | 283.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.111 | 0.224 | 0.28 | 0.385 |
| 02 | 0.128 | 0.409 | 0.248 | 0.215 |
| 03 | 0.057 | 0.103 | 0.038 | 0.803 |
| 04 | 0.012 | 0.142 | 0.809 | 0.037 |
| 05 | 0.987 | 0.007 | 0.004 | 0.002 |
| 06 | 0.012 | 0.14 | 0.124 | 0.724 |
| 07 | 0.036 | 0.01 | 0.061 | 0.894 |
| 08 | 0.022 | 0.001 | 0.928 | 0.048 |
| 09 | 0.461 | 0.002 | 0.536 | 0.001 |
| 10 | 0.037 | 0.672 | 0.017 | 0.274 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.801 | -0.111 | 0.112 | 0.43 |
| 02 | -0.665 | 0.491 | -0.009 | -0.15 |
| 03 | -1.454 | -0.881 | -1.854 | 1.162 |
| 04 | -2.941 | -0.558 | 1.17 | -1.878 |
| 05 | 1.369 | -3.393 | -3.814 | -4.243 |
| 06 | -2.941 | -0.572 | -0.695 | 1.059 |
| 07 | -1.904 | -3.098 | -1.39 | 1.269 |
| 08 | -2.352 | -4.554 | 1.307 | -1.614 |
| 09 | 0.608 | -4.243 | 0.76 | -4.554 |
| 10 | -1.878 | 0.984 | -2.578 | 0.091 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.814695 |
| 0.0005 | 5.686015 |
| 0.0001 | 7.32812 |