Motif | PBX1.H12CORE.1.P.B |
Gene (human) | PBX1 (GeneCards) |
Gene synonyms (human) | PRL |
Gene (mouse) | Pbx1 |
Gene synonyms (mouse) | Pbx-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | PBX1.H12CORE.1.P.B |
Gene (human) | PBX1 (GeneCards) |
Gene synonyms (human) | PRL |
Gene (mouse) | Pbx1 |
Gene synonyms (mouse) | Pbx-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 10 |
Consensus | bbTGAYTGRY |
GC content | 47.55% |
Information content (bits; total / per base) | 9.766 / 0.977 |
Data sources | ChIP-Seq |
Aligned words | 1033 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 2 (13) | 0.709 | 0.899 | 0.562 | 0.796 | 0.611 | 0.838 | 1.626 | 2.803 | 46.959 | 141.18 |
Mouse | 12 (79) | 0.82 | 0.9 | 0.697 | 0.81 | 0.76 | 0.852 | 2.37 | 2.968 | 122.357 | 237.004 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | TALE-type HD {3.1.4} (TFClass) |
TF subfamily | PBX {3.1.4.4} (TFClass) |
TFClass ID | TFClass: 3.1.4.4.1 |
HGNC | HGNC:8632 |
MGI | MGI:97495 |
EntrezGene (human) | GeneID:5087 (SSTAR profile) |
EntrezGene (mouse) | GeneID:18514 (SSTAR profile) |
UniProt ID (human) | PBX1_HUMAN |
UniProt ID (mouse) | PBX1_MOUSE |
UniProt AC (human) | P40424 (TFClass) |
UniProt AC (mouse) | P41778 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 2 human, 12 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | PBX1.H12CORE.1.P.B.pcm |
PWM | PBX1.H12CORE.1.P.B.pwm |
PFM | PBX1.H12CORE.1.P.B.pfm |
Alignment | PBX1.H12CORE.1.P.B.words.tsv |
Threshold to P-value map | PBX1.H12CORE.1.P.B.thr |
Motif in other formats | |
JASPAR format | PBX1.H12CORE.1.P.B_jaspar_format.txt |
MEME format | PBX1.H12CORE.1.P.B_meme_format.meme |
Transfac format | PBX1.H12CORE.1.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 115.0 | 231.0 | 289.0 | 398.0 |
02 | 132.0 | 423.0 | 256.0 | 222.0 |
03 | 59.0 | 106.0 | 39.0 | 829.0 |
04 | 12.0 | 147.0 | 836.0 | 38.0 |
05 | 1020.0 | 7.0 | 4.0 | 2.0 |
06 | 12.0 | 145.0 | 128.0 | 748.0 |
07 | 37.0 | 10.0 | 63.0 | 923.0 |
08 | 23.0 | 1.0 | 959.0 | 50.0 |
09 | 476.0 | 2.0 | 554.0 | 1.0 |
10 | 38.0 | 694.0 | 18.0 | 283.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.111 | 0.224 | 0.28 | 0.385 |
02 | 0.128 | 0.409 | 0.248 | 0.215 |
03 | 0.057 | 0.103 | 0.038 | 0.803 |
04 | 0.012 | 0.142 | 0.809 | 0.037 |
05 | 0.987 | 0.007 | 0.004 | 0.002 |
06 | 0.012 | 0.14 | 0.124 | 0.724 |
07 | 0.036 | 0.01 | 0.061 | 0.894 |
08 | 0.022 | 0.001 | 0.928 | 0.048 |
09 | 0.461 | 0.002 | 0.536 | 0.001 |
10 | 0.037 | 0.672 | 0.017 | 0.274 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.801 | -0.111 | 0.112 | 0.43 |
02 | -0.665 | 0.491 | -0.009 | -0.15 |
03 | -1.454 | -0.881 | -1.854 | 1.162 |
04 | -2.941 | -0.558 | 1.17 | -1.878 |
05 | 1.369 | -3.393 | -3.814 | -4.243 |
06 | -2.941 | -0.572 | -0.695 | 1.059 |
07 | -1.904 | -3.098 | -1.39 | 1.269 |
08 | -2.352 | -4.554 | 1.307 | -1.614 |
09 | 0.608 | -4.243 | 0.76 | -4.554 |
10 | -1.878 | 0.984 | -2.578 | 0.091 |
P-value | Threshold |
---|---|
0.001 | 4.814695 |
0.0005 | 5.686015 |
0.0001 | 7.32812 |