MotifPAX7.H12INVITRO.0.P.B
Gene (human)PAX7
(GeneCards)
Gene synonyms (human)HUP1
Gene (mouse)Pax7
Gene synonyms (mouse)Pax-7
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusdhdKTCAhRSYn
GC content49.87%
Information content (bits; total / per base)7.454 / 0.621
Data sourcesChIP-Seq
Aligned words900

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 3 (21) 0.755 0.801 0.626 0.666 0.708 0.765 2.11 2.42 95.456 158.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 8 experiments median 0.55 0.549 0.526 0.52 0.511 0.512
best 0.974 0.962 0.909 0.891 0.77 0.771
Methyl HT-SELEX, 2 experiments median 0.808 0.798 0.729 0.728 0.634 0.651
best 0.974 0.962 0.909 0.891 0.764 0.771
Non-Methyl HT-SELEX, 6 experiments median 0.533 0.521 0.516 0.516 0.511 0.508
best 0.959 0.94 0.899 0.873 0.77 0.766

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.531 0.022 -0.058 -0.053
batch 2 0.556 0.366 0.114 0.039
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classPaired box factors {3.2} (TFClass)
TF familyPD+HD {3.2.1} (TFClass)
TF subfamilyPAX3-like {3.2.1.1} (TFClass)
TFClass IDTFClass: 3.2.1.1.2
HGNCHGNC:8621
MGIMGI:97491
EntrezGene (human)GeneID:5081
(SSTAR profile)
EntrezGene (mouse)GeneID:18509
(SSTAR profile)
UniProt ID (human)PAX7_HUMAN
UniProt ID (mouse)PAX7_MOUSE
UniProt AC (human)P23759
(TFClass)
UniProt AC (mouse)P47239
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 3 mouse
HT-SELEX 6
Methyl-HT-SELEX 2
PCM
ACGT
01179.0125.0180.0416.0
02200.0156.0104.0440.0
03206.082.0266.0346.0
0413.031.0647.0209.0
0532.0139.020.0709.0
0621.0796.03.080.0
07748.096.03.053.0
08127.0425.050.0298.0
09202.023.0605.070.0
1014.0357.0516.013.0
11122.0155.054.0569.0
12118.0247.0306.0229.0
PFM
ACGT
010.1990.1390.20.462
020.2220.1730.1160.489
030.2290.0910.2960.384
040.0140.0340.7190.232
050.0360.1540.0220.788
060.0230.8840.0030.089
070.8310.1070.0030.059
080.1410.4720.0560.331
090.2240.0260.6720.078
100.0160.3970.5730.014
110.1360.1720.060.632
120.1310.2740.340.254
PWM
ACGT
01-0.227-0.582-0.2210.611
02-0.117-0.363-0.7630.667
03-0.088-0.9960.1660.428
04-2.736-1.9361.051-0.073
05-1.906-0.477-2.3461.143
06-2.3011.258-3.876-1.021
071.196-0.842-3.876-1.422
08-0.5660.632-1.4780.279
09-0.107-2.2170.984-1.151
10-2.670.4590.826-2.736
11-0.606-0.369-1.4040.923
12-0.6390.0930.3050.017
Standard thresholds
P-value Threshold
0.001 5.053315
0.0005 5.69728
0.0001 6.979535