MotifPAX4.H12INVIVO.1.S.D
Gene (human)PAX4
(GeneCards)
Gene synonyms (human)
Gene (mouse)Pax4
Gene synonyms (mouse)Pax-4
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length16
ConsensusnnYTAATTARYKMAWd
GC content25.7%
Information content (bits; total / per base)16.587 / 1.037
Data sourcesHT-SELEX
Aligned words667

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.684 0.652 0.605 0.592 0.555 0.557
best 0.955 0.932 0.917 0.885 0.851 0.819
Methyl HT-SELEX, 1 experiments median 0.955 0.932 0.917 0.885 0.851 0.819
best 0.955 0.932 0.917 0.885 0.851 0.819
Non-Methyl HT-SELEX, 5 experiments median 0.61 0.589 0.56 0.55 0.532 0.531
best 0.894 0.843 0.843 0.791 0.768 0.729
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classPaired box factors {3.2} (TFClass)
TF familyPD+HD {3.2.1} (TFClass)
TF subfamilyPAX4-like {3.2.1.2} (TFClass)
TFClass IDTFClass: 3.2.1.2.1
HGNCHGNC:8618
MGIMGI:97488
EntrezGene (human)
EntrezGene (mouse)GeneID:18506
(SSTAR profile)
UniProt ID (human)PAX4_HUMAN
UniProt ID (mouse)PAX4_MOUSE
UniProt AC (human)O43316
(TFClass)
UniProt AC (mouse)P32115
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
01197.0120.0146.0204.0
02130.25125.25246.25165.25
034.0500.050.0113.0
042.03.0151.0511.0
05609.053.00.05.0
06667.00.00.00.0
070.00.00.0667.0
080.00.00.0667.0
09655.012.00.00.0
10268.027.0349.023.0
1122.0286.047.0312.0
1226.038.0123.0480.0
13514.070.029.054.0
14606.018.022.021.0
1598.079.060.0430.0
16132.589.598.5346.5
PFM
ACGT
010.2950.180.2190.306
020.1950.1880.3690.248
030.0060.750.0750.169
040.0030.0040.2260.766
050.9130.0790.00.007
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
090.9820.0180.00.0
100.4020.040.5230.034
110.0330.4290.070.468
120.0390.0570.1840.72
130.7710.1050.0430.081
140.9090.0270.0330.031
150.1470.1180.090.645
160.1990.1340.1480.519
PWM
ACGT
010.165-0.325-0.1320.2
02-0.244-0.2830.387-0.009
03-3.3991.092-1.182-0.385
04-3.838-3.595-0.0981.113
051.288-1.126-4.64-3.235
061.379-4.64-4.64-4.64
07-4.64-4.64-4.641.379
08-4.64-4.64-4.641.379
091.361-2.514-4.64-4.64
100.471-1.7720.734-1.922
11-1.9640.535-1.2420.622
12-1.807-1.447-0.3011.051
131.119-0.855-1.704-1.108
141.283-2.149-1.964-2.007
15-0.525-0.736-1.0050.941
16-0.227-0.614-0.520.726
Standard thresholds
P-value Threshold
0.001 1.80956
0.0005 3.19536
0.0001 6.06846