PATZ1.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	PATZ1.H12RSNP.0.P.D
Gene (human)	PATZ1 (GeneCards)
Gene synonyms (human)	PATZ, RIAZ, ZBTB19, ZNF278, ZSG
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vKSGRMGGGRSbvSvRdRRRvnS
GC content	73.21%
Information content (bits; total / per base)	13.912 / 0.605
Data sources	ChIP-Seq
Aligned words	959

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.717	0.725	0.478	0.518	0.789	0.835	2.675	2.893	13.611	32.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.3
HGNC	HGNC:13071
MGI
EntrezGene (human)	GeneID:23598 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	PATZ1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HBE1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	PATZ1.H12RSNP.0.P.D.pcm
PWM	PATZ1.H12RSNP.0.P.D.pwm
PFM	PATZ1.H12RSNP.0.P.D.pfm
Alignment	PATZ1.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	PATZ1.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	PATZ1.H12RSNP.0.P.D_jaspar_format.txt
MEME format	PATZ1.H12RSNP.0.P.D_meme_format.meme
Transfac format	PATZ1.H12RSNP.0.P.D_transfac_format.txt
Homer format	PATZ1.H12RSNP.0.P.D_homer_format_0.001.txt PATZ1.H12RSNP.0.P.D_homer_format_0.0005.txt PATZ1.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	282.0	176.0	377.0	124.0
02	74.0	62.0	649.0	174.0
03	118.0	211.0	568.0	62.0
04	120.0	13.0	807.0	19.0
05	155.0	65.0	726.0	13.0
06	456.0	396.0	4.0	103.0
07	18.0	6.0	717.0	218.0
08	19.0	10.0	921.0	9.0
09	85.0	23.0	825.0	26.0
10	286.0	40.0	613.0	20.0
11	190.0	215.0	524.0	30.0
12	61.0	422.0	246.0	230.0
13	173.0	220.0	400.0	166.0
14	55.0	169.0	673.0	62.0
15	292.0	149.0	448.0	70.0
16	281.0	134.0	506.0	38.0
17	175.0	102.0	500.0	182.0
18	87.0	60.0	738.0	74.0
19	174.0	118.0	606.0	61.0
20	306.0	80.0	541.0	32.0
21	260.0	185.0	482.0	32.0
22	178.0	172.0	431.0	178.0
23	64.0	327.0	490.0	78.0

PFM

	A	C	G	T
01	0.294	0.184	0.393	0.129
02	0.077	0.065	0.677	0.181
03	0.123	0.22	0.592	0.065
04	0.125	0.014	0.842	0.02
05	0.162	0.068	0.757	0.014
06	0.475	0.413	0.004	0.107
07	0.019	0.006	0.748	0.227
08	0.02	0.01	0.96	0.009
09	0.089	0.024	0.86	0.027
10	0.298	0.042	0.639	0.021
11	0.198	0.224	0.546	0.031
12	0.064	0.44	0.257	0.24
13	0.18	0.229	0.417	0.173
14	0.057	0.176	0.702	0.065
15	0.304	0.155	0.467	0.073
16	0.293	0.14	0.528	0.04
17	0.182	0.106	0.521	0.19
18	0.091	0.063	0.77	0.077
19	0.181	0.123	0.632	0.064
20	0.319	0.083	0.564	0.033
21	0.271	0.193	0.503	0.033
22	0.186	0.179	0.449	0.186
23	0.067	0.341	0.511	0.081

PWM

	A	C	G	T
01	0.161	-0.307	0.45	-0.653
02	-1.16	-1.332	0.991	-0.318
03	-0.702	-0.127	0.858	-1.332
04	-0.685	-2.798	1.209	-2.456
05	-0.432	-1.286	1.103	-2.798
06	0.64	0.499	-3.743	-0.835
07	-2.505	-3.443	1.091	-0.094
08	-2.456	-3.026	1.341	-3.115
09	-1.024	-2.279	1.231	-2.165
10	0.175	-1.756	0.934	-2.409
11	-0.231	-0.108	0.778	-2.03
12	-1.348	0.562	0.026	-0.041
13	-0.324	-0.085	0.509	-0.364
14	-1.449	-0.347	1.028	-1.332
15	0.196	-0.471	0.622	-1.214
16	0.158	-0.576	0.743	-1.805
17	-0.312	-0.845	0.731	-0.273
18	-1.001	-1.364	1.12	-1.16
19	-0.318	-0.702	0.923	-1.348
20	0.242	-1.083	0.81	-1.969
21	0.081	-0.257	0.695	-1.969
22	-0.295	-0.329	0.583	-0.295
23	-1.301	0.308	0.711	-1.108

Standard thresholds

P-value	Threshold
0.001	3.73061
0.0005	4.72561
0.0001	6.81661